| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1238050 | 36 (0.650) | 3 (0.070) | 3/130 | 3.6 | 8.5% | coding (487/915 nt) | ldcA | muramoyltetrapeptide carboxypeptidase |
| ? | NZ_CP009273 | = 1238032 | 36 (0.830) | coding (505/915 nt) | ldcA | muramoyltetrapeptide carboxypeptidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1237951‑1238050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccgacatgtcgggccGAAGGCACGTTGTGGGGAGGCAATCTTGCGATGCTGATTTCACTGATCGGTACACCGTGGATGCCAAAAATTGAGAACGGTATTC < NZ_CP009273/1238032‑1237948 TACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGAC < 1:906394/90‑1 CCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACAT > 1:955768/1‑90 TCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCG < 2:1066218/90‑1 gccTCCACGGTCTACCGATCAGTGAAATCAGCATCGCAACACTGCCTCCCCCCAACCTGCCTTCGGCCCGACCTGTCGGGCCGAAGGCAC < 2:1359983/87‑1 ACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCGAAGGCACGTTGTGGGGAGGC < 2:922045/90‑1 CAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACA > 2:920345/1‑54 AAGATTGCCTCCCCCCCACGTGCCTTCGGCCCGACATGTCGGGCCGAAGGCACGTTGTGGGGAGGCAATCTTGCGATGCTGATTTCACTG < 2:298232/90‑1 GGCCCGACATGTCGGGCCGAAGGCACGTTGTGGGGAGGCAATCTTGCGATGCTGATTTCACTGATCGGTACACCGTGGATGCCAAAAATT > 1:1008438/1‑90 CGACATGTCGGGCCGAAGGCACGTTGTGGGGAGGCAATCTTGCGATGCTGATTTCACTGATCGGTACACCGTGGATGCCAAAAATTGAGA < 1:1148802/90‑1 CGACATGTCGGGCCGAAGGCACGTTGTGGGGAGGCAATCTTGCGATGCTGATTTCACTGACCGGTACACCGTGGATGCCAAAAATTGAGA > 1:191620/1‑90 TGTCGGGCCGAAGGCACGTTGTGGGGAGGCAATCTTGCGATGCTGATTTCACTG > 1:920345/1‑54 GGGCCGAAGGCACGTTGTGGGGAGGCAATCTTGCGATGCTGATTTCACTGATCGGTACACCGTGGATGCCAAAAATTGAGAACGGTATTC < 1:502108/90‑1 TACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1237951‑1238050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccgacatgtcgggccGAAGGCACGTTGTGGGGAGGCAATCTTGCGATGCTGATTTCACTGATCGGTACACCGTGGATGCCAAAAATTGAGAACGGTATTC < NZ_CP009273/1238032‑1237948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |