New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3421945 =	NA (NA)	4 (0.080)	4/156	3.7	NA	noncoding (177/1542 nt)	BW25113_RS17000	16S ribosomal RNA
	?	NZ_CP009273	3421960 =	NA (NA)					noncoding (162/1542 nt)	BW25113_RS17000	16S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

TTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/3422038‑3421945 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccgTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCT  >  NZ_CP009273/3421960‑3422048                                                                                                                                                                                         TTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAAT                                                                                               <  1:602420/90‑1  TGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATA                                                                                              >  2:434296/1‑90                                  GTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGTTTCCAGTAGTTATCCCCCTCCATCAGGC                                                              <  2:1063322/90‑1                                   TAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGTTTCC                                                                                      <  2:857877/65‑1                                   TAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGTTTCC                                                                                      >  1:857877/1‑65                                              AAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC                                                  <  1:818635/90‑1                                               AACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAAT                                                                                               >  2:1605698/1‑44                                               AACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAAT                                                                                               <  1:1605698/44‑1                                                                                          TACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTT      <  2:1185867/90‑1                                                                                           ACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCCCCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTT     <  2:1000933/90‑1                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  1:220014/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  2:554565/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  2:392163/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  2:1616778/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  2:1557009/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  2:1541862/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  2:1285271/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  2:675923/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  1:809733/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  1:1809/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTC    >  1:466817/1‑90                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC                                                  >  1:1495850/1‑44                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC                                                  <  2:1495850/44‑1                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCC                                                      <  2:622032/40‑1                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCC                                                      >  1:622032/1‑40                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCC                                                       <  1:1231463/39‑1                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCC                                                       >  2:1231463/1‑39                                                                                            CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTATCCCAGACATTACTCACCCGTCCGCCACTCGTAAGCGAAACCGCAAGCTGTTTC    >  1:1243159/1‑90                                                                                              GTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCT  >  1:838129/1‑90                                                                                              GTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCT  >  1:191541/1‑90                                                                                                                                                                                         TTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/3422038‑3421945 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccgTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCT  >  NZ_CP009273/3421960‑3422048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.