| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3000957 = | 51 (0.930) | 5 (0.110) | 5/134 | 2.9 | 11.7% | coding (89/1197 nt) | dpaL | diaminopropionate ammonia‑lyase |
| ? | NZ_CP009273 | 3000973 = | 34 (0.760) | coding (105/1197 nt) | dpaL | diaminopropionate ammonia‑lyase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGAAGATTGATATCGCCGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTGGTGTGAAGAAAATTCTC > NZ_CP009273/3000884‑3001057 | ttGAAGATTGATATCGCCGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTc > 1:895193/1‑90 (MQ=255) aGATTGATATCGCCGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTccacc > 1:14138/1‑90 (MQ=255) aTTGATATCGCCGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAg < 1:1602903/90‑1 (MQ=255) gATATCGCCGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGaaa > 1:1514858/1‑90 (MQ=255) atCGCCGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATa > 1:232563/1‑90 (MQ=255) atCGCCGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGACAGTTCCACCAGAAAATa > 1:329366/1‑90 (MQ=255) ttgcgagatcgtccagcgcacaaagcggtgttgggcgataaccagctattttctggtggAACTGGCGCGCCAGTTCCACCAGaaa > 1:1169045‑M1/60‑85 (MQ=255) ttgcgagatcgtccagcgcacaaagcggtgttgggcgataaccagctattttctggtggAACTGGCGCGCCAGTTCCACCAGaaa < 2:1169045‑M1/26‑1 (MQ=255) gCCGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCt > 1:489787/1‑90 (MQ=255) ccGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTg < 2:1173142/90‑1 (MQ=255) cGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTgg > 1:1333577/1‑90 (MQ=255) aTAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGtt < 1:769377/90‑1 (MQ=255) aTAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGtt < 1:1572393/90‑1 (MQ=255) atcgtccagcacacaaagcggtgttgggcgataaccagctattttctggtggAACTGGCGCGCCCGTTACACCAGAAAATAGCTGGTTAt > 2:62123‑M1/53‑90 (MQ=255) aaCAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTAt < 1:980036/90‑1 (MQ=255) aaCAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTAt < 2:1333577/90‑1 (MQ=255) aaCAAATTTTTCAACGGCGAAACATCACCGCCCTTTTCGCAAAGCCAGTCCAAACTGGCGCGCCAGTACCACCAGAAAATAGCTGTTTAt < 2:769119/90‑1 (MQ=255) aaTTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGcc > 2:346756/1‑90 (MQ=255) ccagcgcacaaagcggtgttgggcgataaccagctattttctggtggaactggcgcgccagttCCCCCAGAAAATAGCTGGTTATCGccc < 2:326495‑M2/27‑1 (MQ=255) aTTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGccc < 1:1031456/90‑1 (MQ=255) aTTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGccc < 1:1324535/90‑1 (MQ=255) aTTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGccc < 2:744650/90‑1 (MQ=255) aagcggtgttgggcgataaccagctattttctggtgtGACGGGAGCGCCAGTTCCACCAGAAAAAAGATGGTTATCGCCCAACaccgttt < 2:45041‑M1/53‑4 (MQ=255) aaacggtgttgggcgataaccatcttttttctggtggaactggcgctcccgtcACACCAGAAAATAGCTGGTTATCGCCCAACACCGCtt < 2:45041‑M2/37‑1 (MQ=255) gCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCttt > 1:775397/1‑90 (MQ=255) aaCATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc < 1:967734/90‑1 (MQ=255) aaCATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc < 2:674225/90‑1 (MQ=255) aCATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgcg < 1:714436/90‑1 (MQ=255) gggcgataaccagctattttctgggggAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTgg < 2:326495‑M1/63‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTgg > 1:672757/1‑90 (MQ=255) aCCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGa > 1:457384/1‑90 (MQ=255) gCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGa > 2:44483/1‑90 (MQ=255) gCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGa > 1:1045141/1‑90 (MQ=255) ctctTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGAt < 2:369839/90‑1 (MQ=255) ataaccagctattttctggtgtaacgggcgcgccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGTGCTGGACGAt > 2:62123‑M2/39‑90 (MQ=255) tttCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCg > 2:1564183/1‑90 (MQ=255) cGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCaa < 2:996259/90‑1 (MQ=255) cGCAAAGCCAGGCCAAACTGGCGCGACAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCaa < 2:329366/90‑1 (MQ=255) gCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTAT‑GCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAAc < 2:868425/90‑1 (MQ=255) tttctggtggaactggcgcgccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCaa < 2:1169045‑M2/59‑1 (MQ=255) tttctggtggaactggcgcgccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCaa > 1:1169045‑M2/27‑85 (MQ=255) cAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCttttt < 1:135767/90‑1 (MQ=255) aGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTg > 2:1405223/1‑90 (MQ=255) aGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTg > 1:152645/1‑90 (MQ=255) AACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTGGTGTga < 1:869691‑M1/90‑1 (MQ=255) GGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTGGTGTgaagaa > 2:1426152‑M1/1‑90 (MQ=255) GGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTGGTGTgaagaa > 1:1617244‑M1/1‑90 (MQ=255) gcgcgccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTGGTGTGAAGaaa > 1:19397‑M2/12‑90 (MQ=255) ccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTGGTGTGAAGAAAATtct < 1:1175550‑M2/84‑1 (MQ=255) cagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTGGTGTGAAGAAAATtctc < 2:199427‑M2/85‑1 (MQ=255) | TTGAAGATTGATATCGCCGATAACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTTGGTGTGAAGAAAATTCTC > NZ_CP009273/3000884‑3001057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |