BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 55126	117 (1.710)	4 (0.070)	3/140	4.2	3.8%	coding (1984/2355 nt)	lptD	LPS assembly protein LptD
*	?	NZ_CP009273	= 55116	100 (1.670)	4 (0.070)	3/140	4.2	3.8%	coding (1994/2355 nt)	lptD	LPS assembly protein LptD
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 117 total aligned reads displayed.

GGCGACAGCACCTACCTGCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCC  >  NZ_CP009273/55043‑55214

ggCGACAGCACCTACCTGCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCt                                                                                    >  2:1869514/1‑90 (MQ=255)

ggCGACAGCACCTACCTGCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCt                                                                                    <  1:877241/90‑1 (MQ=255)

      aGCACCTACCTGCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTa                                                                              <  1:1683912/90‑1 (MQ=255)

       gCACCTACCTGCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTaa                                                                             >  2:344892/1‑90 (MQ=255)

       gCACCTACCTGCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTaa                                                                             >  1:1536966/1‑90 (MQ=255)

           ctacctGCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGt                                                                         <  1:226099/90‑1 (MQ=255)

              cctGCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAAt                                                                      <  2:852321/90‑1 (MQ=255)

                 gCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTa                                                                              <  1:774011/79‑1 (MQ=255)

                   gAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGc                                                                 <  2:1217613/90‑1 (MQ=255)

                   gAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGc                                                                 <  1:222646/90‑1 (MQ=255)

                   gAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGc                                                                 <  1:1819290/90‑1 (MQ=255)

                    aaaTACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCt                                                                >  1:1606039/1‑90 (MQ=255)

                     aaTACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTg                                                               <  2:1765349/90‑1 (MQ=255)

                       tACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTa                                                             >  1:1084461/1‑90 (MQ=255)

                           aTTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAg                                                         >  2:1323347/1‑90 (MQ=255)

                             tCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGAc                                                       <  1:1427063/90‑1 (MQ=255)

                                tataTTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGt                                                    >  2:1889997/1‑90 (MQ=255)

                                tataTTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGt                                                    >  2:615610/1‑90 (MQ=255)

                                  tatTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCt                                                  <  1:1196748/90‑1 (MQ=255)

                                      gCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTa                                                                              <  1:787825/58‑1 (MQ=255)

                                      gCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTa                                                                              >  2:787825/1‑58 (MQ=255)

                                      gCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCAt                                              >  1:1364578/1‑90 (MQ=255)

                                      gCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCAt                                              >  2:1969273/1‑90 (MQ=255)

                                      gCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCAt                                              >  1:407613/1‑90 (MQ=255)

                                      gCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCAt                                              >  2:122235/1‑90 (MQ=255)

                                      gCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCAt                                              >  1:953675/1‑90 (MQ=255)

                                      gCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCAt                                              >  2:1186375/1‑90 (MQ=255)

                                      gCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCAt                                              >  2:395729/1‑90 (MQ=255)

                                       cTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATc                                             >  2:2078156/1‑90 (MQ=255)

                                        tCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGACGTAAAGGTAATTCAGCTGTACCAGACGGTCTTCATcc                                            >  2:1811797/1‑90 (MQ=255)

                                         cagcagTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATccc                                           >  1:1755578/1‑90 (MQ=255)

                                         cagcagTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATccc                                           <  1:1801488/90‑1 (MQ=255)

                                         cagcagTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATccc                                           <  2:361643/90‑1 (MQ=255)

                                         cagcagTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATccc                                           >  1:1422827/1‑90 (MQ=255)

                                          agcagTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCg                                          <  1:165840/90‑1 (MQ=255)

                                           gcagTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCTGCTGTACCAGACGGTCTTCATCCCGa                                         >  1:2117320/1‑90 (MQ=255)

                                           gcagTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGa                                         >  2:1114112/1‑90 (MQ=255)

                                           gcagTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGa                                         >  1:9647/1‑90 (MQ=255)

                                           gcagTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGa                                         >  1:1649160/1‑90 (MQ=255)

                                              gTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACGAGACGGTCTTCATCCCGACgg                                      >  2:48676/1‑90 (MQ=255)

                                              gTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACgg                                      >  1:1479210/1‑90 (MQ=255)

                                                ggAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACg                                                                           <  2:1780229/51‑1 (MQ=255)

                                                ggAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACg                                                                           >  1:1780229/1‑51 (MQ=255)

                                                ggAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGAc                                        >  2:1803769/1‑86 (MQ=255)

                                                ggAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGAc                                        <  1:1803769/86‑1 (MQ=255)

                                                ggAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTa                                    >  2:928414/1‑90 (MQ=255)

                                                   aTAGTACTTAGGCAGGGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTCCCAGACGGTCTTCATCCCGACGGTATTc                                 <  1:1522477/90‑1 (MQ=255)

                                                   aTAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCa                                                          >  2:1543680/1‑65 (MQ=255)

                                                   aTAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCa                                                          <  1:1543680/65‑1 (MQ=255)

                                                     aGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACTGTCTTCATCCCGACGGTATTCaa                               >  1:1889285/1‑90 (MQ=255)

                                                     aGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCaa                               >  2:1928045/1‑90 (MQ=255)

                                                     aGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCaa                               >  2:754901/1‑90 (MQ=255)

                                                     aGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCaa                               >  1:1175750/1‑90 (MQ=255)

                                                      gTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAAt                              >  1:873754/1‑90 (MQ=255)

                                                        aCTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGc                            >  2:2035607/1‑90 (MQ=255)

                                                        aCTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGc                            >  2:614455/1‑90 (MQ=255)

                                                        aCTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGc                            >  2:2084768/1‑90 (MQ=255)

                                                         cTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCt                           <  1:1420618/90‑1 (MQ=255)

                                                          ttAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTg                          <  1:344892/90‑1 (MQ=255)

                                                           tAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTgg                         >  2:627597/1‑90 (MQ=255)

                                                           tAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTgg                         >  1:734540/1‑90 (MQ=255)

                                                           tAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATACTgg                         >  1:31212/1‑90 (MQ=255)

                                                           tAGGCAGCGTAGCCTCAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTgg                         >  1:1487237/1‑90 (MQ=255)

                                                           tAGGCAGAGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTg                          >  2:1279143/1‑89 (MQ=255)

                                                           tAGGCAGAGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTg                          <  1:1279143/89‑1 (MQ=255)

                                                            aGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGa                        <  1:107774/90‑1 (MQ=255)

                                                               cAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGtt                     >  2:1912328/1‑90 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGc                                                                 >  1:295072/1‑45 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGc                                                                 <  2:295072/45‑1 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCATACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTa                    >  1:1203611/1‑90 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCt                                                  >  1:343941/1‑60 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCt                                                  <  2:343941/60‑1 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACgg                                      >  1:1425690/1‑72 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACg                                       <  1:859497/71‑1 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACg                                       >  2:859497/1‑71 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTa                    >  2:1469998/1‑90 (MQ=255)

                                                                aGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTa                    >  2:371761/1‑90 (MQ=255)

                                                                 gCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTAc                   >  2:1971814/1‑90 (MQ=255)

                                                                 gCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTAc                   >  2:1622662/1‑90 (MQ=255)

                                                                  cGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACt                  <  1:2078156/90‑1 (MQ=255)

                                                                   gTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTg                 <  1:614455/90‑1 (MQ=255)

                                                                   gTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTg                 <  1:2084768/90‑1 (MQ=255)

                                                                      gCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTc              >  2:2127972/1‑90 (MQ=255)

                                                                         tGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCt           >  1:1105360/1‑90 (MQ=255)

                                                                           aaTATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTAc         >  1:1530123/1‑90 (MQ=255)

                                                                           aaTATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTAc         <  2:1606039/90‑1 (MQ=255)

                                                                           aaTATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACAAGACGGTCTTCATCCCGACGGTATTCAATGCt                           >  2:1783675/1‑72 (MQ=255)

                                                                             tatatTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGt       <  1:335409/90‑1 (MQ=255)

                                                                             tatatTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGt       <  1:508731/90‑1 (MQ=255)

                                                                             tatatTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGt       <  1:1888149/90‑1 (MQ=255)

                                                                             tatatTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGt       <  2:1530123/90‑1 (MQ=255)

                                                                                atTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTAt                                   >  2:203947/1‑59 (MQ=255)

                                                                                atTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTAt                                   <  1:203947/59‑1 (MQ=255)

                                                                                atTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTc                                 <  1:553044/61‑1 (MQ=255)

                                                                                atTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTc                                 >  2:553044/1‑61 (MQ=255)

                                                                                  tCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATcc  <  2:1990523/90‑1 (MQ=255)

                                                                                  tCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATcc  <  2:618037/90‑1 (MQ=255)

                                                                                  tCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATcc  <  1:1869514/90‑1 (MQ=255)

                                                                                  tCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATcc  <  2:1487237/90‑1 (MQ=255)

                                                                                  tCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATcc  <  2:873754/90‑1 (MQ=255)

GGCGACAGCACCTACCTGCGAAATACCATTCTTATATTGCTCAGCAGTGGAATAGTACTTAGGCAGCGTAGCCTGAATATATTCCGGGCTGGCGTAACGGTAATTCAGCTGTACCAGACGGTCTTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCC  >  NZ_CP009273/55043‑55214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.