| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2807274 | 71 (1.040) | 3 (0.050) | 3/140 | 4.2 | 5.0% | coding (1300/1539 nt) | emrB | multidrug efflux MFS transporter permease subunit EmrB |
| ? | NZ_CP009273 | = 2807314 | 51 (0.850) | coding (1340/1539 nt) | emrB | multidrug efflux MFS transporter permease subunit EmrB | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGG > NZ_CP009273/2807185‑2807363 | ttACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTg > 2:1010710/1‑90 (MQ=255) tACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGa > 1:1506692/1‑90 (MQ=255) tACGCGAACGCTGGCGGGGTCTATCGG‑ACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAg < 2:1449844/90‑1 (MQ=255) aCGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAg < 2:831883/90‑1 (MQ=255) aCGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAg < 2:1785731/90‑1 (MQ=255) aCGCGAACGCTGGAGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAg < 1:1327548/90‑1 (MQ=255) aCGCGAAAGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAg > 2:1273158/1‑90 (MQ=255) gAACGCTGTCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCgg > 2:871620/1‑90 (MQ=255) gAACGCTGGCGGGGGCAATCGGCACGTGGATAAACCCCACCAAGTGGACCAACCTTGAGTCGAAGGACCATGCGCAGGGAACTGAggctg > 1:1763371/1‑86 (MQ=255) aCGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTa > 2:2054107/1‑90 (MQ=255) aCGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTa > 1:973097/1‑90 (MQ=255) cTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAAc < 1:1776894/90‑1 (MQ=255) tGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAAcc < 2:499408/90‑1 (MQ=255) gggTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTc < 1:1162568/90‑1 (MQ=255) cTATTGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAAcc > 2:78363/1‑90 (MQ=255) aTCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCg > 1:1548833/1‑90 (MQ=255) aTCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCg < 2:1506692/90‑1 (MQ=255) tCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGa < 2:129392/90‑1 (MQ=255) ggCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAAt < 1:1780034/90‑1 (MQ=255) aCGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGcc > 1:180727/1‑90 (MQ=255) aCGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGcc > 2:815156/1‑90 (MQ=255) aCGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGcc > 2:493680/1‑90 (MQ=255) gTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCa < 1:1876223/90‑1 (MQ=255) cGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAgg < 1:1273158/90‑1 (MQ=255) aCCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATg < 2:187415/90‑1 (MQ=255) cACGACCATGTGGACCAACCGCTAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGa > 2:2050067/1‑86 (MQ=255) cACGACCATGTGGACCAACCGCTAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGa < 1:2050067/86‑1 (MQ=255) cACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTa < 2:1802444/90‑1 (MQ=255) aCGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTAc > 1:61960/1‑90 (MQ=255) aCGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTAc > 2:549542/1‑90 (MQ=255) aCGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTAc > 1:1670117/1‑90 (MQ=255) cATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCa > 2:258411/1‑90 (MQ=255) aTGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCa < 1:1203120/74‑1 (MQ=255) aTGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCa > 2:1203120/1‑74 (MQ=255) aTGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCaa > 1:911484/1‑90 (MQ=255) gtgGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACt < 2:61960/90‑1 (MQ=255) gtgGACCAACCGCGAGTCGATGCACCATGAGCAGTTGACTGAGTCGGTAAACCCGTTaaa < 1:707600/60‑1 (MQ=255) gtgGACCAACCGCGAGTCGATGCACCATGAGCAGTTGACTGAGTCGGTAAACCCGTTaaa > 2:707600/1‑60 (MQ=255) tgGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAAcc < 2:1975002/52‑1 (MQ=255) tgGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAAcc > 1:1975002/1‑52 (MQ=255) aCCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGaa < 2:1022417/90‑1 (MQ=255) aCCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGaa < 1:1959867/90‑1 (MQ=255) aCCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGaa < 1:1968321/90‑1 (MQ=255) aCCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGaa < 1:258411/90‑1 (MQ=255) aCCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGaa < 1:584558/90‑1 (MQ=255) ccAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAg < 2:620780/79‑1 (MQ=255) ccAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAg > 1:620780/1‑79 (MQ=255) ccAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAg < 1:78363/90‑1 (MQ=255) aaCCGCGAGTCGATGCACCATGCTCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACa < 1:700814/76‑1 (MQ=255) aaCCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACa > 2:700814/1‑76 (MQ=255) cgcgAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCtt < 1:1212184/90‑1 (MQ=255) cgcgAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCtt > 1:1228345/1‑90 (MQ=255) cgAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTgg > 2:339486/1‑90 (MQ=255) gAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGaa > 1:1054787/1‑81 (MQ=255) gAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGaa < 2:1054787/81‑1 (MQ=255) tCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATg < 2:1167313/90‑1 (MQ=255) gATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGAc < 2:1354003/90‑1 (MQ=255) tGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGc < 1:2083780/90‑1 (MQ=255) tGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGc < 1:119747/90‑1 (MQ=255) aCCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGCAAc < 2:1548833/90‑1 (MQ=255) aCCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGCAAc < 2:1133315/90‑1 (MQ=255) aTGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGaa > 1:818875/1‑68 (MQ=255) aTGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGaa < 2:818875/68‑1 (MQ=255) aTGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGCAAcagc > 2:798007/1‑90 (MQ=255) gcgcAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGCAAcagcag > 2:749813/1‑90 (MQ=255) gcgcAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGCAAcagcag > 2:775769/1‑90 (MQ=255) ttGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGCAACAGCAGGCATCa > 1:2137789/1‑90 (MQ=255) gACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCa > 2:1017660/1‑36 (MQ=255) gACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCa < 1:1017660/36‑1 (MQ=255) gACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGc < 2:692471/74‑1 (MQ=255) gACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGc > 1:692471/1‑74 (MQ=255) gAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTgg < 2:1757937/90‑1 (MQ=255) | TTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCGCAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATGCCCAGGCGATGTACAGTCAACTGGAAGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGG > NZ_CP009273/2807185‑2807363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |