New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 4321902 =104 (1.520)4 (0.070) 4/140 3.8 4.4% intergenic (+81/‑31) proP/pmrR glycine betaine/L‑proline transporter ProP/LpxT activity modulator PmrR
?NZ_CP009273 4321930 = 83 (1.380)intergenic (+109/‑3) proP/pmrR glycine betaine/L‑proline transporter ProP/LpxT activity modulator PmrR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 104 total aligned reads displayed.

GATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGC  >  NZ_CP009273/4321813‑4321989
                                                                                         |                                                                                       
gatgaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATa                                                                                         >  2:1949748/1‑90 (MQ=255)
   gaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATActc                                                                                      <  1:1653732/90‑1 (MQ=255)
   gaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATActc                                                                                      <  2:2114020/90‑1 (MQ=255)
    aaTAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATActct                                                                                     <  1:798445/90‑1 (MQ=255)
    aaTAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATActct                                                                                     <  1:1238724/90‑1 (MQ=255)
    aaTAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATActct                                                                                     <  1:855774/90‑1 (MQ=255)
      tAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTctcc                                                                                   >  1:861535/1‑90 (MQ=255)
      tAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTctcc                                                                                   >  1:179372/1‑90 (MQ=255)
        aGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTctcctc                                                                                 >  1:280195/1‑90 (MQ=255)
        aGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTctcctc                                                                                 >  2:803337/1‑90 (MQ=255)
         gCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCtcctcc                                                                                <  1:76917/90‑1 (MQ=255)
         gCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCtcctcc                                                                                <  1:1530801/90‑1 (MQ=255)
          cTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGTCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCa                                                                               >  2:1924264/1‑90 (MQ=255)
              aaCGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGtt                                                                           <  1:1233439/90‑1 (MQ=255)
              aaCGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGtt                                                                           <  1:393200/90‑1 (MQ=255)
              aaCGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGtt                                                                           <  2:280195/90‑1 (MQ=255)
              aaCGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGtt                                                                           <  1:1705412/90‑1 (MQ=255)
                cGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTaa                                                                         <  2:1301939/90‑1 (MQ=255)
                cGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTaa                                                                         >  2:89016/1‑90 (MQ=255)
                 ggATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAc                                                                        >  2:1099854/1‑90 (MQ=255)
                   aTGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACgg                                                                      <  1:832614/90‑1 (MQ=255)
                   aTGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACgg                                                                      <  1:89016/90‑1 (MQ=255)
                      gCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg                                                                   >  2:2117830/1‑90 (MQ=255)
                         tGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGgaga                                                                >  2:1382276/1‑90 (MQ=255)
                          gATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagga                                                                  <  1:1528569/87‑1 (MQ=255)
                          gATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagga                                                                  >  2:1528569/1‑87 (MQ=255)
                           aTGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGgaggag                                                                 >  1:1678065/1‑87 (MQ=255)
                           aTGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGgaggag                                                                 <  2:1678065/87‑1 (MQ=255)
                             gtgACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGc                                                            <  1:1949748/90‑1 (MQ=255)
                              tgACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCa                                                           <  1:1382276/90‑1 (MQ=255)
                               gACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCaa                                                          <  2:1249599/90‑1 (MQ=255)
                               gACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCaa                                                          >  1:1803272/1‑90 (MQ=255)
                               gACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACCCGCATACTCTCCTCCAGGtt                                                                           >  2:868762/1‑73 (MQ=255)
                               gACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACCCGCATACTCTCCTCCAGGtt                                                                           <  1:868762/73‑1 (MQ=255)
                                aCGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAAt                                                         >  1:1050451/1‑90 (MQ=255)
                                aCGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAAt                                                         >  1:142728/1‑90 (MQ=255)
                                    tGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGaaa                                                     >  2:221867/1‑90 (MQ=255)
                                    tGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGaaa                                                     >  1:60127/1‑90 (MQ=255)
                                    tGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGaaa                                                     >  1:743484/1‑90 (MQ=255)
                                     gTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGaaaa                                                    >  1:1485926/1‑90 (MQ=255)
                                     gTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGaaaa                                                    >  1:1255378/1‑90 (MQ=255)
                                       cTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAAc                                                  <  1:313267/90‑1 (MQ=255)
                                         tATCAGGCCAATTTAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCg                                                <  1:1518041/90‑1 (MQ=255)
                                           tCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtg                                              <  1:2100243/90‑1 (MQ=255)
                                             aGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGtt                                            >  1:731493/1‑90 (MQ=255)
                                               gCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTa                                          >  1:273327/1‑90 (MQ=255)
                                               gCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTa                                          >  1:286769/1‑90 (MQ=255)
                                               gCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTa                                          >  2:1692956/1‑90 (MQ=255)
                                               gCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTa                                          >  2:2007125/1‑90 (MQ=255)
                                                 cAATTGGACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCg                                                >  1:1567779/1‑82 (MQ=255)
                                                 cAATTGGACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCg                                                <  2:1567779/82‑1 (MQ=255)
                                                  aaTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGa                                       <  1:598068/90‑1 (MQ=255)
                                                  aaTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGa                                       <  1:1337389/90‑1 (MQ=255)
                                                   aTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCtcctcc                                                                                <  1:1225216/48‑1 (MQ=255)
                                                   aTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCtcctcc                                                                                >  2:1225216/1‑48 (MQ=255)
                                                   aTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt                                             <  2:185187/83‑1 (MQ=255)
                                                   aTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt                                             >  1:185187/1‑83 (MQ=255)
                                                   aTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGaa                                      >  2:634416/1‑90 (MQ=255)
                                                   aTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGa                                       <  1:951374/89‑1 (MQ=255)
                                                    ttGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGaaa                                     <  1:858903/90‑1 (MQ=255)
                                                      gAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGt                                   <  2:1803272/90‑1 (MQ=255)
                                                      gAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGt                                   <  1:221867/90‑1 (MQ=255)
                                                      gAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGt                                   <  2:1082526/90‑1 (MQ=255)
                                                        aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGtt                                                                           <  1:2143360/48‑1 (MQ=255)
                                                        aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGtt                                                                           >  2:746120/1‑48 (MQ=255)
                                                        aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGtt                                                                           >  2:2143361/1‑48 (MQ=255)
                                                        aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGt                                                              <  1:1391285/61‑1 (MQ=255)
                                                        aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGt                                                              >  2:1391285/1‑61 (MQ=255)
                                                        aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGttt                                 >  2:1654021/1‑90 (MQ=255)
                                                         ctctTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGGGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTa                                >  1:197978/1‑90 (MQ=255)
                                                           ctTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAAc                              <  1:108406/90‑1 (MQ=255)
                                                           ctTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAAc                              <  1:462915/90‑1 (MQ=255)
                                                           ctTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAAc                              <  1:1999783/90‑1 (MQ=255)
                                                           ctTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAAc                              <  2:835073/90‑1 (MQ=255)
                                                           ctTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCATGTTTATGAAAGTTTAAc                              <  2:1435476/90‑1 (MQ=255)
                                                             tAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTa                            <  1:2007125/90‑1 (MQ=255)
                                                              aaGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAc                           <  2:60127/90‑1 (MQ=255)
                                                                ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCg                         <  1:1692956/90‑1 (MQ=255)
                                                                  ttCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtg                                              <  1:2071108/67‑1 (MQ=255)
                                                                  ttCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtg                                              >  2:2071108/1‑67 (MQ=255)
                                                                   tCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGgaggag                                                                 <  2:1965911/47‑1 (MQ=255)
                                                                   tCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGgaggag                                                                 >  1:1965911/1‑47 (MQ=255)
                                                                   tCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAAc                              <  1:1935437/82‑1 (MQ=255)
                                                                   tCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAAc                              >  2:1935437/1‑82 (MQ=255)
                                                                   tCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCgtgt                      >  1:1892058/1‑90 (MQ=255)
                                                                   tCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCgtgt                      >  1:41136/1‑90 (MQ=255)
                                                                     aCTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGaaa                                     >  2:1210737/1‑73 (MQ=255)
                                                                     aCTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGaaa                                     <  1:1210737/73‑1 (MQ=255)
                                                                     aCTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAAc                              <  2:347495/80‑1 (MQ=255)
                                                                     aCTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAAc                              >  1:347495/1‑80 (MQ=255)
                                                                           tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGaa                                      >  1:1081161/1‑66 (MQ=255)
                                                                           tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGaa                                      <  2:1081161/66‑1 (MQ=255)
                                                                             tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCt            <  1:2117830/90‑1 (MQ=255)
                                                                              ctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtg           >  2:323480/1‑90 (MQ=255)
                                                                              ctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtg           >  2:339420/1‑90 (MQ=255)
                                                                              ctGACGCCCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtg           >  1:1316838/1‑90 (MQ=255)
                                                                                gACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtggt         >  2:1937193/1‑90 (MQ=255)
                                                                                    cgcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTc     <  2:273327/90‑1 (MQ=255)
                                                                                     gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTca    >  1:1415472/1‑90 (MQ=255)
                                                                                       aTACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagc  <  2:861535/90‑1 (MQ=255)
                                                                                         |                                                                                       
GATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGC  >  NZ_CP009273/4321813‑4321989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.