New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 3259730 =104 (1.520)4 (0.060) 4/154 4.1 3.8% coding (695/939 nt) tdcA transcriptional regulator TdcA
?NZ_CP009273 3259738 = 100 (1.510)coding (687/939 nt) tdcA transcriptional regulator TdcA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 101 total aligned reads displayed.

TGATTAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCATATTAGTTTGTGG  >  NZ_CP009273/3259652‑3259827
                                                                                      |                                                                                         
tGATTAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAg                                                                                        >  1:1884046/1‑90 (MQ=255)
 gATTAGAACCAGAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGt                                                                                       >  2:743505/1‑90 (MQ=255)
 gATTAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGt                                                                                       >  1:1097154/1‑90 (MQ=255)
 gATTAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGt                                                                                       >  2:2254/1‑90 (MQ=255)
 gATTAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGt                                                                                       >  1:946844/1‑90 (MQ=255)
 gATTAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGt                                                                                       >  2:1624029/1‑90 (MQ=255)
 gATTAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGt                                                                                       >  2:728851/1‑90 (MQ=255)
   ttAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCg                                                                                     <  2:711317/90‑1 (MQ=255)
   ttAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCg                                                                                     <  2:1570918/90‑1 (MQ=255)
      gAACAAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGtt                                                                                  <  2:1019139/90‑1 (MQ=255)
        aCCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGtttt                                                                                >  2:1356834/1‑90 (MQ=255)
           aaaaGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAAc                                                                             >  2:1217772/1‑90 (MQ=255)
           aaaaGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAAc                                                                             >  2:585590/1‑90 (MQ=255)
           aaaaGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAAc                                                                             >  1:2145995/1‑90 (MQ=255)
             aaGGTTACGTCATATCACAAGGAATTTCAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGa                                                                           <  1:253413/90‑1 (MQ=255)
             aaGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGa                                                                           <  1:1356834/90‑1 (MQ=255)
             aaGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGa                                                                           <  2:1237087/90‑1 (MQ=255)
               ggTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         <  2:2141283/90‑1 (MQ=255)
               ggTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         <  2:1036078/90‑1 (MQ=255)
                  gACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGttt                                                                      >  2:307735/1‑90 (MQ=255)
                  gACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGttt                                                                      >  2:385942/1‑90 (MQ=255)
                   aCGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGtttt                                                                     >  1:198716/1‑90 (MQ=255)
                   aCGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGtttt                                                                     >  1:1140352/1‑90 (MQ=255)
                          atCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTc                                                                                      <  2:627392/66‑1 (MQ=255)
                          atCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTc                                                                                      >  1:627392/1‑66 (MQ=255)
                           tCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTg                                                             <  1:735342/90‑1 (MQ=255)
                             acaAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGAt                                                           >  1:821143/1‑90 (MQ=255)
                              caAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         >  2:795150/1‑75 (MQ=255)
                              caAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         <  1:795150/75‑1 (MQ=255)
                              caAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATg                                                          >  2:1098088/1‑90 (MQ=255)
                                   aaTTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCAtt                                                     <  1:1624029/90‑1 (MQ=255)
                                     ttACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTc                                                   <  2:1090217/90‑1 (MQ=255)
                                     ttACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTc                                                   <  1:1843293/90‑1 (MQ=255)
                                       aCAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCtt                                                 <  2:267216/90‑1 (MQ=255)
                                        cAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCttt                                                >  2:477055/1‑90 (MQ=255)
                                          gTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGt                                              <  1:468953/90‑1 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         <  2:194309/61‑1 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         <  1:627037/61‑1 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         >  2:627037/1‑61 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         >  1:194309/1‑61 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         <  1:1180880/61‑1 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         >  2:1180880/1‑61 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGcc                                                        >  2:1692610/1‑78 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGcc                                                        <  1:1692610/78‑1 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGt                                              >  1:1648093/1‑88 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGt                                              <  2:1648093/88‑1 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTaa                                            >  1:19990/1‑90 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTaa                                            <  1:116923/90‑1 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTaa                                            >  1:1222056/1‑90 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTaa                                            <  1:307735/90‑1 (MQ=255)
                                            tAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTaa                                            <  2:619857/90‑1 (MQ=255)
                                              aGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTATTTGTAACg                                          <  2:1066500/90‑1 (MQ=255)
                                                 aaTCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTaa                                            <  2:1678328/85‑1 (MQ=255)
                                                 aaTCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTaa                                            >  1:1678328/1‑85 (MQ=255)
                                                 aaTCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACgtag                                       >  1:441958/1‑90 (MQ=255)
                                                   tCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         <  2:2006573/54‑1 (MQ=255)
                                                   tCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATg                                                                         >  1:2006573/1‑54 (MQ=255)
                                                    cAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTaa                                    >  1:580239/1‑90 (MQ=255)
                                                    cAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTaa                                    >  2:725335/1‑90 (MQ=255)
                                                      gCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGc                                  <  2:284162/90‑1 (MQ=255)
                                                        aTTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAg                                <  1:725335/90‑1 (MQ=255)
                                                        aTTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAg                                <  1:2018448/90‑1 (MQ=255)
                                                           gagaACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTc                             <  1:1089513/90‑1 (MQ=255)
                                                           gagaACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTc                             >  2:2103092/1‑90 (MQ=255)
                                                             gaACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAg                                <  1:1476294/85‑1 (MQ=255)
                                                             gaACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAg                                >  2:1476294/1‑85 (MQ=255)
                                                             gaACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGc                           >  1:828576/1‑90 (MQ=255)
                                                             gaACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGc                           >  2:577631/1‑90 (MQ=255)
                                                             gaACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGc                           <  2:946844/90‑1 (MQ=255)
                                                             gaACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGc                           <  1:110084/90‑1 (MQ=255)
                                                              aaCAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCt                          <  2:19990/90‑1 (MQ=255)
                                                                cAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTaa                                            >  2:1787706/1‑70 (MQ=255)
                                                                cAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTaa                                            <  1:1787706/70‑1 (MQ=255)
                                                                cAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGc                           >  2:382703/1‑87 (MQ=255)
                                                                cAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGc                           <  1:382703/87‑1 (MQ=255)
                                                                cAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTgt                        >  2:235441/1‑90 (MQ=255)
                                                                  aGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTgtag                      >  2:1270574/1‑90 (MQ=255)
                                                                  aGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTgtag                      >  2:970127/1‑90 (MQ=255)
                                                                  aGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTgtag                      <  1:1421326/90‑1 (MQ=255)
                                                                   gATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTgtagt                     <  2:1140352/90‑1 (MQ=255)
                                                                   gATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTgtagt                     <  2:198716/90‑1 (MQ=255)
                                                                       ataAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTAccc                 <  2:191686/90‑1 (MQ=255)
                                                                       ataAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTAccc                 >  1:2149855/1‑90 (MQ=255)
                                                                       ataAATTGTCACCCCTGTCTCGGTTGTCACGATGTTTTTAATACTGATGCAATTTCTTTGTAACGTAGTAAGTACCTCTCTGTAGTActc                 <  1:856/90‑3 (MQ=255)
                                                                        taAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGATGTAGTAcccc                >  1:760164/1‑90 (MQ=255)
                                                                          aaTTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCat              >  2:1317115/1‑90 (MQ=255)
                                                                          aaTTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCat              >  2:1639325/1‑90 (MQ=255)
                                                                            ttGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTGAGCAGTTCGCTGTAGTACCCCatat            >  2:584814/1‑90 (MQ=255)
                                                                            ttGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCatat            >  2:648332/1‑90 (MQ=255)
                                                                            ttGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCatat            >  1:1258089/1‑90 (MQ=255)
                                                                            ttGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCatat            >  2:1786998/1‑90 (MQ=255)
                                                                             tGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCATAtt           <  1:1270574/90‑1 (MQ=255)
                                                                             tGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCATAtt           <  2:821143/90‑1 (MQ=255)
                                                                             tGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCATAtt           <  1:577631/90‑1 (MQ=255)
                                                                             tGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCATAtt           <  1:385942/90‑1 (MQ=255)
                                                                              gTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCATATTa          >  1:1457120/1‑90 (MQ=255)
                                                                                 aCGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTAc                   <  2:650511/78‑1 (MQ=255)
                                                                                 aCGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTAc                   >  1:650511/1‑78 (MQ=255)
                                                                                  cGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCATATTAGttt      <  1:648332/90‑1 (MQ=255)
                                                                                      tGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCGTTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCATATTAGTTTGTgg  <  1:730677/90‑1 (MQ=255)
                                                                                      |                                                                                         
TGATTAGAACCAAAAGGTGACGTCATATCACAAGGAATTACAGTTAAGAAATCAGCATTGAGAACAAGATTATAAATTGTCACGACTGAGTCGGTTTTAACGATGTTTTCAATACTGATGCCATTTCTTTGTAACGTAGTAAGCAGTTCGCTGTAGTACCCCATATTAGTTTGTGG  >  NZ_CP009273/3259652‑3259827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.