| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4461088 = | 92 (1.340) | 4 (0.060) | 4/152 | 4.0 | 4.4% | coding (177/462 nt) | pyrI | aspartate carbamoyltransferase regulatory subunit |
| ? | NZ_CP009273 | 4461097 = | 86 (1.320) | coding (168/462 nt) | pyrI | aspartate carbamoyltransferase regulatory subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCTT > NZ_CP009273/4461011‑4461183 | cGGTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTg > 1:1914833/1‑90 (MQ=255)cGGTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTg > 2:1752445/1‑90 (MQ=255) gTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCg < 1:388708/90‑1 (MQ=255) gTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCg < 1:1529200/90‑1 (MQ=255) ttAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGGATTTTCGATTTTGATCAGATCTTTGCgg > 1:1324281/1‑90 (MQ=255) ttAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGGATTTTCGATTTTGATCAGATCTTTGCgg > 2:896494/1‑90 (MQ=255) tAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGc > 1:1128066/1‑90 (MQ=255) tAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGc < 2:1313095/90‑1 (MQ=255) aaCCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTTATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGcc > 1:837729/1‑90 (MQ=255) aaCCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGcc > 2:808034/1‑90 (MQ=255) aaCCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGcc > 1:782515/1‑90 (MQ=255) gTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtc > 2:824907/1‑90 (MQ=255) gTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtc > 2:1017053/1‑90 (MQ=255) ggCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc < 2:129288/90‑1 (MQ=255) ttGCGGCGCATACAATGCCAGTTGATCTACTTTATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGcc < 2:837729/90‑1 (MQ=255) gcggcgCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAg > 2:1783343/1‑90 (MQ=255) cgtcgcATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGa < 1:919490/87‑1 (MQ=255) cggcgCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGa < 1:1017053/90‑1 (MQ=255) cgacgcATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGa < 1:1975650/87‑1 (MQ=255) gcATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGc < 2:782515/90‑1 (MQ=255) gcATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGc > 2:1722928/1‑90 (MQ=255) cATACAATTCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCa > 2:898601/1‑90 (MQ=255) cATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCa < 1:808034/90‑1 (MQ=255) aaTGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTc > 2:19929/1‑90 (MQ=255) aaTGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTc < 1:875395/90‑1 (MQ=255) aTGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCa > 1:652437/1‑90 (MQ=255) tGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAg > 2:392408/1‑90 (MQ=255) gCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGa < 1:392408/90‑1 (MQ=255) gTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCaa > 1:903373/1‑90 (MQ=255) gTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCaa > 2:1308645/1‑90 (MQ=255) gTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCaa > 2:2140478/1‑90 (MQ=255) gTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCaa > 1:1168604/1‑90 (MQ=255) tGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATg > 1:647434/1‑90 (MQ=255) aTCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGt > 2:1848056/1‑90 (MQ=255) aTCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGt > 1:554490/1‑90 (MQ=255) cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc < 2:1773119/61‑1 (MQ=255) cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc > 1:1773119/1‑61 (MQ=255) cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa < 2:128867/90‑1 (MQ=255) cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa < 2:1914833/90‑1 (MQ=255) cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa < 1:1848056/90‑1 (MQ=255) cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa < 2:429877/90‑1 (MQ=255) tACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtc > 1:994384/1‑58 (MQ=255) tACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtc < 2:994384/58‑1 (MQ=255) tACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGAt > 1:479601/1‑90 (MQ=255) aCTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATg > 2:776641/1‑90 (MQ=255) cTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc > 1:1079982/1‑58 (MQ=255) cTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc < 2:1079982/58‑1 (MQ=255) ttGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATgcg > 1:358057/1‑90 (MQ=255) tGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACTAATGGTGATgcgc < 1:1752445/90‑1 (MQ=255) tGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATgcgc > 1:890016/1‑90 (MQ=255) tGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATgcga < 1:1106694/90‑2 (MQ=255) aTCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa > 2:215311/1‑83 (MQ=255) aTCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa < 1:215311/83‑1 (MQ=255) ttCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATc > 1:485575/1‑90 (MQ=255) cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCTCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCg > 1:2067875/1‑90 (MQ=255) cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa > 1:362870/1‑78 (MQ=255) cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa < 2:362870/78‑1 (MQ=255) cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCg > 1:2059162/1‑90 (MQ=255) cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCg > 1:1060362/1‑90 (MQ=255) cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCg > 1:316410/1‑90 (MQ=255) aCTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGt > 2:1216129/1‑90 (MQ=255) cAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTc > 2:1448497/1‑90 (MQ=255) aaaaaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCg > 1:1309943/1‑90 (MQ=255) aaaaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGAAGGTTCAGACCAATGGTGATgcgc > 1:1578460/1‑77 (MQ=255) aaaaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGAAGGTTCAGACCAATGGTGATgcgc < 2:1578460/77‑1 (MQ=255) aaaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGt < 1:1216129/90‑1 (MQ=255) aaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTc < 2:1168604/90‑1 (MQ=255) aGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCa < 2:1300898/90‑1 (MQ=255) gTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGc < 1:880687/90‑1 (MQ=255) tATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGa < 1:37292/56‑1 (MQ=255) tATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGa > 2:37292/1‑56 (MQ=255) tATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCt > 2:1465218/1‑90 (MQ=255) aTTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCTCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCtt < 2:2067875/90‑1 (MQ=255) ttttCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTg > 2:1855935/1‑90 (MQ=255) ttttCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGAGCCGTTTCGGTCAGCTTg > 1:1680517/1‑90 (MQ=255) ttCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGaa < 1:825111/90‑1 (MQ=255) ttCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGCTTCGGTCAGCTTGaa > 2:1389608/1‑90 (MQ=255) cGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACa < 1:1389608/90‑1 (MQ=255) cGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACa < 1:824907/90‑1 (MQ=255) ttttGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGAc < 2:358057/90‑1 (MQ=255) ttGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa > 2:1472410/1‑55 (MQ=255) ttGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa < 1:1472410/55‑1 (MQ=255) aTCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAAc < 2:229692/90‑1 (MQ=255) aTCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAAc < 2:479601/90‑1 (MQ=255) aTCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAAc < 2:1822662/90‑1 (MQ=255) aTCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAAc < 1:19929/90‑1 (MQ=255) gATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCt > 2:1128335/1‑90 (MQ=255) aTCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCtt < 1:1384348/90‑1 (MQ=255) aTCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCtt < 1:474974/90‑1 (MQ=255) | CGGTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCTT > NZ_CP009273/4461011‑4461183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |