New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 4461088 =92 (1.340)4 (0.060) 4/152 4.0 4.4% coding (177/462 nt) pyrI aspartate carbamoyltransferase regulatory subunit
?NZ_CP009273 4461097 = 86 (1.320)coding (168/462 nt) pyrI aspartate carbamoyltransferase regulatory subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCTT  >  NZ_CP009273/4461011‑4461183
                                                                                      |                                                                                      
cGGTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTg                                                                                     >  1:1914833/1‑90 (MQ=255)
cGGTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTg                                                                                     >  2:1752445/1‑90 (MQ=255)
  gTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCg                                                                                   <  1:388708/90‑1 (MQ=255)
  gTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCg                                                                                   <  1:1529200/90‑1 (MQ=255)
   ttAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGGATTTTCGATTTTGATCAGATCTTTGCgg                                                                                  >  1:1324281/1‑90 (MQ=255)
   ttAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGGATTTTCGATTTTGATCAGATCTTTGCgg                                                                                  >  2:896494/1‑90 (MQ=255)
    tAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGc                                                                                 >  1:1128066/1‑90 (MQ=255)
    tAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGc                                                                                 <  2:1313095/90‑1 (MQ=255)
     aaCCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTTATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGcc                                                                                >  1:837729/1‑90 (MQ=255)
     aaCCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGcc                                                                                >  2:808034/1‑90 (MQ=255)
     aaCCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGcc                                                                                >  1:782515/1‑90 (MQ=255)
         gTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtc                                                                            >  2:824907/1‑90 (MQ=255)
         gTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtc                                                                            >  2:1017053/1‑90 (MQ=255)
           ggCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc                                                                          <  2:129288/90‑1 (MQ=255)
              ttGCGGCGCATACAATGCCAGTTGATCTACTTTATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGcc                                                                       <  2:837729/90‑1 (MQ=255)
                gcggcgCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAg                                                                     >  2:1783343/1‑90 (MQ=255)
                 cgtcgcATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGa                                                                    <  1:919490/87‑1 (MQ=255)
                 cggcgCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGa                                                                    <  1:1017053/90‑1 (MQ=255)
                 cgacgcATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGa                                                                    <  1:1975650/87‑1 (MQ=255)
                     gcATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGc                                                                <  2:782515/90‑1 (MQ=255)
                     gcATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGc                                                                >  2:1722928/1‑90 (MQ=255)
                      cATACAATTCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCa                                                               >  2:898601/1‑90 (MQ=255)
                      cATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCa                                                               <  1:808034/90‑1 (MQ=255)
                           aaTGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTc                                                          >  2:19929/1‑90 (MQ=255)
                           aaTGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTc                                                          <  1:875395/90‑1 (MQ=255)
                            aTGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCa                                                         >  1:652437/1‑90 (MQ=255)
                             tGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAg                                                        >  2:392408/1‑90 (MQ=255)
                              gCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGa                                                       <  1:392408/90‑1 (MQ=255)
                                  gTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCaa                                                   >  1:903373/1‑90 (MQ=255)
                                  gTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCaa                                                   >  2:1308645/1‑90 (MQ=255)
                                  gTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCaa                                                   >  2:2140478/1‑90 (MQ=255)
                                  gTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCaa                                                   >  1:1168604/1‑90 (MQ=255)
                                    tGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATg                                                 >  1:647434/1‑90 (MQ=255)
                                      aTCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGt                                               >  2:1848056/1‑90 (MQ=255)
                                      aTCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGt                                               >  1:554490/1‑90 (MQ=255)
                                        cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc                                                                          <  2:1773119/61‑1 (MQ=255)
                                        cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc                                                                          >  1:1773119/1‑61 (MQ=255)
                                        cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             <  2:128867/90‑1 (MQ=255)
                                        cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             <  2:1914833/90‑1 (MQ=255)
                                        cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             <  1:1848056/90‑1 (MQ=255)
                                        cTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             <  2:429877/90‑1 (MQ=255)
                                         tACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtc                                                                            >  1:994384/1‑58 (MQ=255)
                                         tACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtc                                                                            <  2:994384/58‑1 (MQ=255)
                                         tACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGAt                                            >  1:479601/1‑90 (MQ=255)
                                          aCTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATg                                           >  2:776641/1‑90 (MQ=255)
                                           cTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc                                                                          >  1:1079982/1‑58 (MQ=255)
                                           cTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCAtctc                                                                          <  2:1079982/58‑1 (MQ=255)
                                            ttGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATgcg                                         >  1:358057/1‑90 (MQ=255)
                                             tGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACTAATGGTGATgcgc                                        <  1:1752445/90‑1 (MQ=255)
                                             tGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATgcgc                                        >  1:890016/1‑90 (MQ=255)
                                             tGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATgcga                                        <  1:1106694/90‑2 (MQ=255)
                                               aTCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             >  2:215311/1‑83 (MQ=255)
                                               aTCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             <  1:215311/83‑1 (MQ=255)
                                                  ttCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATc                                   >  1:485575/1‑90 (MQ=255)
                                                    cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCTCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCg                                 >  1:2067875/1‑90 (MQ=255)
                                                    cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             >  1:362870/1‑78 (MQ=255)
                                                    cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             <  2:362870/78‑1 (MQ=255)
                                                    cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCg                                 >  1:2059162/1‑90 (MQ=255)
                                                    cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCg                                 >  1:1060362/1‑90 (MQ=255)
                                                    cACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCg                                 >  1:316410/1‑90 (MQ=255)
                                                     aCTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGt                                >  2:1216129/1‑90 (MQ=255)
                                                        cAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTc                             >  2:1448497/1‑90 (MQ=255)
                                                         aaaaaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCg                            >  1:1309943/1‑90 (MQ=255)
                                                          aaaaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGAAGGTTCAGACCAATGGTGATgcgc                                        >  1:1578460/1‑77 (MQ=255)
                                                          aaaaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGAAGGTTCAGACCAATGGTGATgcgc                                        <  2:1578460/77‑1 (MQ=255)
                                                           aaaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGt                          <  1:1216129/90‑1 (MQ=255)
                                                            aaGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTc                         <  2:1168604/90‑1 (MQ=255)
                                                             aGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCa                        <  2:1300898/90‑1 (MQ=255)
                                                               gTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGc                      <  1:880687/90‑1 (MQ=255)
                                                                tATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGa                                                       <  1:37292/56‑1 (MQ=255)
                                                                tATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGa                                                       >  2:37292/1‑56 (MQ=255)
                                                                tATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCt                     >  2:1465218/1‑90 (MQ=255)
                                                                 aTTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCTCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCtt                    <  2:2067875/90‑1 (MQ=255)
                                                                  ttttCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTg                   >  2:1855935/1‑90 (MQ=255)
                                                                  ttttCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGAGCCGTTTCGGTCAGCTTg                   >  1:1680517/1‑90 (MQ=255)
                                                                    ttCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGaa                 <  1:825111/90‑1 (MQ=255)
                                                                    ttCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGCTTCGGTCAGCTTGaa                 >  2:1389608/1‑90 (MQ=255)
                                                                      cGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACa               <  1:1389608/90‑1 (MQ=255)
                                                                      cGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACa               <  1:824907/90‑1 (MQ=255)
                                                                         ttttGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGAc            <  2:358057/90‑1 (MQ=255)
                                                                           ttGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             >  2:1472410/1‑55 (MQ=255)
                                                                           ttGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGa                                             <  1:1472410/55‑1 (MQ=255)
                                                                              aTCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAAc       <  2:229692/90‑1 (MQ=255)
                                                                              aTCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAAc       <  2:479601/90‑1 (MQ=255)
                                                                              aTCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAAc       <  2:1822662/90‑1 (MQ=255)
                                                                              aTCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAAc       <  1:19929/90‑1 (MQ=255)
                                                                                  gATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCt   >  2:1128335/1‑90 (MQ=255)
                                                                                   aTCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCtt  <  1:1384348/90‑1 (MQ=255)
                                                                                   aTCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCtt  <  1:474974/90‑1 (MQ=255)
                                                                                      |                                                                                      
CGGTTAACCGTGGCTTGCGGCGCATACAATGCCAGTTGATCTACTTGATCTTCACTCAAAAAGGTATTTTCGATTTTGATCAGATCTTTGCGGCCCATCTCGCCAGAAGGCAGGTTCAGACCAATGGTGATGCGCTGATCCGTTTCGGTCAGCTTGAACAGACTCAACAGCTT  >  NZ_CP009273/4461011‑4461183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.