Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092733,659,0620CA47.3% 172.4 / 77.5 112A37S (GCG→TCG) gadXacid resistance transcriptional activator GadX
Reads supporting (aligned to +/- strand):  ref base C (49/10);  new base A (0/53);  total (49/63)
Fisher's exact test for biased strand distribution p-value = 6.25e-22
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 113 total aligned reads displayed.

GAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAG  >  NZ_CP009273/3658973‑3659146
                                                                                           |                                                                                    
gAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGc                                                                                      >  2:839639/1‑90 (MQ=255)
  gCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCaa                                                                                    <  2:350543/90‑1 (MQ=255)
   cATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCaaa                                                                                   >  2:816106/1‑90 (MQ=255)
    aTCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCaaaa                                                                                  >  2:756255/1‑90 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                                 >  1:1124785/1‑90 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                                 >  1:679247/1‑90 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                                 >  1:605966/1‑90 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                                 >  1:1632774/1‑90 (MQ=255)
       gggAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAcc                                                                               <  1:676790/90‑1 (MQ=255)
       gggAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAcc                                                                               <  2:1160655/90‑1 (MQ=255)
        ggAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCa                                                                              <  2:1597952/90‑1 (MQ=255)
           aaaaTAATAAAAGCGTGTCCCTTGACACAAATACAAAATTTT‑CAACA‑CACTTATCTCCTCGAATTTGGCTTGCATCCGCAAAAACCAGGt                                                                           <  1:1851484/89‑1 (MQ=255)
             aataatGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGATTGCATCCGCAAAAACCAGGTCa                                                                         >  2:1963018/1‑90 (MQ=255)
                aatGAAAGCGTGTCCCTTGACACGAATAAAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAACCCAGGTCACCg                                                                      <  2:488629/90‑1 (MQ=255)
                aatGAAAGCGTGTCCCTTGACACAAATAAAAAATTTT‑CAACC‑CTCTTATCTACTCAATTTTGGCTTGCACCCAAAAAACCCAGGCCCCCg                                                                      <  1:952952/90‑1 (MQ=255)
                aatAAAGGCGTGTCCCTTGACAAAAAAAAAAAATTTT‑CAACC‑CCCTTATCTACTCGATTTTGGCTTGCACCCGAAAAACCCAGGCCACCg                                                                      <  1:951229/90‑1 (MQ=255)
                  tGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCgac                                                                    <  2:1896766/90‑3 (MQ=255)
                  tGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGcc                                                                    >  2:1455031/1‑90 (MQ=255)
                     aaGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCAtt                                                                 >  2:1723449/1‑90 (MQ=255)
                        cGTGCCCCTTGACACAAATAAAAAATTTT‑CAACA‑CACTTATCTACTCAATTTTGGCTTGCACCCAAAAAAACCAGGTCCCCGCCATTaaa                                                              <  1:1455031/90‑1 (MQ=255)
                         gtgtCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                             >  2:1860859/1‑90 (MQ=255)
                         gtgtCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                             >  1:1671652/1‑90 (MQ=255)
                         gtgtCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                             >  2:247107/1‑90 (MQ=255)
                         gtgtCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                             >  2:237502/1‑90 (MQ=255)
                         gtgtCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                             >  2:227759/1‑90 (MQ=255)
                         gtgtCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                             >  1:1829083/1‑90 (MQ=255)
                          tgccccTTGACACGAATAAAAATTTTT‑CAACA‑CCTTTTTCTCCTCGATTTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAAt                                                            <  2:1267098/87‑1 (MQ=255)
                          tgccccTTGACACAAAAAAAAATTTTT‑CAACA‑CTTTTATCTCCTCGAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAAt                                                            <  2:1195771/87‑1 (MQ=255)
                           gtCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATa                                                           >  1:293730/1‑90 (MQ=255)
                             cccTTGACACAAAAAAAAAATTTT‑CAACC‑CACTTATCTATTAAATTTTGGCTTGCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGc                                                         <  1:369672/90‑1 (MQ=255)
                             cccTTGAAACAAAAAAAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGc                                                         <  2:739640/90‑1 (MQ=255)
                             cccTTCACACAAAAAAAAAATTTC‑CAACA‑CACTTATCTACTCAATTTTGCCTTCCACCCGAAAAAACCAGGTCCCCGCCATTAAAATAGc                                                         <  1:1445535/90‑1 (MQ=255)
                               ctggACAAGAATAAAAATTTTT‑CAACC‑CCCTTATCTCCTCAATTTTGGCTTGCATCCGAAAAAACCAGGTCCCCGCCATTAAAATAGCGa                                                       <  2:123550/87‑1 (MQ=255)
                               cTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGa                                                       >  2:1368290/1‑90 (MQ=255)
                               cTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGa                                                       >  2:885056/1‑90 (MQ=255)
                               cTTGACACGAATAAAAAATTTT‑CAACA‑CCTTTATCTCCTCAATTTTGGCTTGCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGa                                                       <  2:134717/90‑1 (MQ=255)
                                 tGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGata                                                     >  1:669844/1‑90 (MQ=255)
                                   acacAAATAAAAATTTTT‑CAACA‑CCCTTATCTCCTCAATTTTGGCTTGCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATAtt                                                   <  2:1712419/90‑1 (MQ=255)
                                    cacaAATACAAAATTTA‑CAACC‑CTCTTATCTACTAAATTTTGGCTTCCACCCAAAAAAACCAGTCCCCCGCCATTAAAATAGCGATATTc                                                  <  1:237502/90‑1 (MQ=255)
                                    cacaAATAAAAATTTTT‑CAACC‑CCTTTATCTACTCAAATTTGGCTTCCACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTc                                                  <  2:1671652/90‑1 (MQ=255)
                                    cacaAATAAAAATTTTT‑AAACC‑CACTTATCTCCTCGATTTTGGCTTCCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTc                                                  <  2:838997/90‑1 (MQ=255)
                                    cacaAATAAAAACTTTC‑CAACA‑CACTTATCTACTCGAATTTGGTTTCCACCCCAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTc                                                  <  2:679247/90‑1 (MQ=255)
                                    cacaAATAAAAAATTTA‑CAACC‑CACTTATCCCCAAAATTTTGGTTTCCACCCAAAAAACCCAGTCCCCCGCCATTAAAATAGCGATATTc                                                  <  1:839347/90‑1 (MQ=255)
                                     acaaaTAAAAAATTTT‑CAACA‑CCCTTATCTCTTCAATTTGGGTTTCCACCCAAAAAAACCGGGCCACCGCCATTAAAATCGCGATATTCa                                                 <  1:1715086/87‑1 (MQ=255)
                                     acaaaTAAAAAATTTA‑AAACA‑CTTTTATCTACTCAATTTTGGCTTCCACCCAAAAAACCCGGGCCCCCGCCATTAAAATAGCGATATTCa                                                 <  1:1094860/87‑1 (MQ=255)
                                      aaaaTAAAAATTTTT‑CAACA‑CTTTTATCTACTCAATTTTGGTTTGCATCCCAAAAACCCAGGTCCCCGCCATTAAAATAGCGATATTCAc                                                <  2:571480/88‑1 (MQ=255)
                                       gAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                               >  2:237926/1‑90 (MQ=255)
                                       gAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                               >  2:1927739/1‑90 (MQ=255)
                                       gAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                               >  2:720105/1‑90 (MQ=255)
                                       gAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                               >  2:842389/1‑90 (MQ=255)
                                        aaTACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCa                                              >  2:1108345/1‑90 (MQ=255)
                                         aaaaaaaaTTTTACAACC‑CATTTATCTCCCCAATTTGGGCTTCCACCCAAAAAACCCGGGCCCCCGCCATTAAAATAGCGATATTCACCa                                              <  1:720105/86‑1 (MQ=255)
                                         aTACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCAt                                             >  2:1810043/1‑90 (MQ=255)
                                          aaaaaatTTTT‑CAACA‑CCTTTATCTACTCAATTTTGTCTTCCACCCAAAAAAACCGGGCCACCGCCATTAAAATAGCGATATTCACCAtt                                            <  1:1847846/87‑1 (MQ=255)
                                          aaaaaaaTTTC‑CAACA‑CACTTATCTACTCAATTTTGGCTTCCACCCAAAAAAACCAGGTCCCCGCCATTAAAATAGCGATATTCACCAtt                                            <  1:1157185/87‑1 (MQ=255)
                                           aaaaaaTTTTCCAACC‑CATTTTTCTACTAAATTTTGGTTTCCACCCAAAAAAACCGGGCCCCCGCCATTAAAATAGCGATATTCACCAtt                                            <  1:614960/88‑1 (MQ=255)
                                            aaaaaTTTTCCAACC‑CCTTTTTCTCCTCAATTTGGGCTTGCACCCGAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTa                                           <  2:185218/89‑1 (MQ=255)
                                            aaaaaTTTT‑CCACACCTCTTATCTACTGAATTTTGTCTCACACCCAAAAAACCCGGCTCCCCGCCATTAAAATAGCGATATTCACCATTa                                           <  1:1512174/89‑1 (MQ=255)
                                               aaTTTC‑CAACA‑CACTTATCTCCTAAATTTTGGTTTGCACCCAAAAAACCCGGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCa                                       <  1:2040077/90‑1 (MQ=255)
                                                 tttt‑CAACC‑CCCTTATCCCCCCGATTTTGGCTTGCACCCGAAAAACCCAGGCCCCCGCCATTAAAATAGCGATATTCACCATTAACCATg                                     <  2:20637/90‑1 (MQ=255)
                                                   ttacAACA‑CTTTTATCTCCTAAAATTTGGCTTCCACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATgg                                    <  1:555649/87‑1 (MQ=255)
                                                   tt‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCa                                                                              <  1:364088/47‑1 (MQ=255)
                                                   tt‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCa                                                                              >  2:364088/1‑47 (MQ=255)
                                                   tt‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCCTgtc                                   >  1:1927199/1‑88 (MQ=255)
                                                    t‑CAACC‑CATTTATCTACTCAAATTTGGCTTCCACCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                  <  2:406804/90‑1 (MQ=255)
                                                    t‑CAACA‑CCCTTATCTCCTCAATTTTGGTTTGCACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                  <  2:798056/90‑1 (MQ=255)
                                                     ccacca‑catTTATCTACTAAATTTTGGCTTCCACCCAAAAAACCCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                  <  1:1990943/86‑1 (MQ=255)
                                                     ccAACC‑CACTTATCTCCTCGATTTTGGCTTGCACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                  <  2:312797/89‑1 (MQ=255)
                                                     caaaCA‑CTCTTATCTACTCGATTTTGGTTTCCCCCCAAAAAACCCAGGCCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                  <  1:839639/88‑1 (MQ=255)
                                                       aaCA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCTATATTCACCATTAACCATGGTgag                                >  1:1263915/1‑90 (MQ=255)
                                                         ca‑cacTTATCTCCTAGATTTTGGCTTGCACCCGAAAAACCCAGGTCCCCGCCATTAAACTAGCGATATTCACCATTAACCATGGTGAGaa                              <  2:708765/90‑1 (MQ=255)
                                                           ccacTTATCTACTCAATTTTGGTTTCCACCCAAAAAAACGGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                             <  1:1812840/89‑1 (MQ=255)
                                                           actcTTATTTATACGATTTTGCCTTCCACCCAAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                             <  1:899916/87‑1 (MQ=255)
                                                            cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAcc                                                                               >  2:1995229/1‑39 (MQ=255)
                                                            cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAata                            >  1:312797/1‑90 (MQ=255)
                                                            cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAata                            >  1:406804/1‑90 (MQ=255)
                                                            cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAata                            >  1:1599129/1‑90 (MQ=255)
                                                              cTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatata                          >  2:1435397/1‑90 (MQ=255)
                                                               ttATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                         >  1:1251516/1‑90 (MQ=255)
                                                                tATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                        >  1:1321071/1‑90 (MQ=255)
                                                                      cTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATgct                  >  1:944039/1‑88 (MQ=255)
                                                                      cTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTc                  >  1:1665480/1‑90 (MQ=255)
                                                                      cTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTc                  >  1:1913924/1‑90 (MQ=255)
                                                                        cGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCtt                >  2:1080022/1‑90 (MQ=255)
                                                                        cGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCtt                >  1:788788/1‑90 (MQ=255)
                                                                        cGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCtt                >  2:159000/1‑90 (MQ=255)
                                                                          aaTTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGc              >  1:73117/1‑90 (MQ=255)
                                                                              tgttttGCATCAGAAAAAACCAGTTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc          <  1:1536661/86‑1 (MQ=255)
                                                                              tggctggcATCCAAAAAACCCGGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc          <  2:1116357/90‑1 (MQ=255)
                                                                              tgccTTCCACCCGAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc          <  2:495375/87‑1 (MQ=255)
                                                                              tGGTTTGCACCCGAAAAACCCAGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc          <  2:287825/90‑1 (MQ=255)
                                                                              tGGTTTGCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc          <  2:1122467/90‑1 (MQ=255)
                                                                              tGGTTTGCACCCAAAAAAACGAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc          <  1:1656391/90‑1 (MQ=255)
                                                                              tGGCTTGCACCCGCAAAACCCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc          <  2:1415032/90‑1 (MQ=255)
                                                                              tGGCTTCCTCCCGAAAACCCCAGTTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc          <  2:788788/90‑1 (MQ=255)
                                                                              tGGCTTCCACCCGAAAAACCCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc          <  2:716416/90‑1 (MQ=255)
                                                                                    gCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTc                                                  >  1:827807/1‑44 (MQ=255)
                                                                                    gCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAAtt    >  1:1819365/1‑90 (MQ=255)
                                                                                    gCATCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTc                                                  <  2:827807/44‑1 (MQ=255)
                                                                                    gCACCCGAAAAACCCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAAtt    <  2:1819365/90‑1 (MQ=255)
                                                                                           |                                                                                    
GAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACA‑CACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAG  >  NZ_CP009273/3658973‑3659146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑