| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,431,963 | 0 | A | G | 51.0% | 72.8 / 131.6 | 96 | S11P (TCC→CCC) | msrA | peptide‑methionine (S)‑S‑oxide reductase MsrA |
| Reads supporting (aligned to +/- strand): ref base A (7/40); new base G (49/0); total (56/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.68e-20 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.19e-15 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTT > NZ_CP009273/4431874‑4432051 | aGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGa < 1:1137756/90‑1 (MQ=255) ggTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGaa < 1:1717688/90‑1 (MQ=255) aTTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAg > 1:1173793/1‑90 (MQ=255) tGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGAt < 1:1048492/90‑1 (MQ=255) tGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGAt < 1:1459961/90‑1 (MQ=255) gTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAAACAGATGc > 2:1295417/1‑90 (MQ=255) tCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATggt > 1:113525/1‑88 (MQ=255) tCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑t > 2:1425069/1‑90 (MQ=255) cATTGAGTGACCGTTGACCGCATGCAGCGTGTCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAAAAGC‑tt > 1:2150191/1‑90 (MQ=255) cATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGC‑tt > 2:1056791/1‑90 (MQ=255) cATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGAAGC‑tt > 2:507702/1‑90 (MQ=255) cATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGAAGC‑tt > 1:1175549/1‑90 (MQ=255) ttGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGAAGG‑tttt > 1:1005320/1‑90 (MQ=255) gAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGACGGGGGAAACCAGATGC‑TTTTTa < 1:1925283/90‑1 (MQ=255) aGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTAt < 2:166715/90‑1 (MQ=255) gTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGTGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATc < 1:1444563/90‑1 (MQ=255) gTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATc < 1:599288/90‑1 (MQ=255) tGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGGAGCAGATGC‑tttttttta > 1:468345/1‑86 (MQ=255) tGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAGCCGCGGC‑tttttttta > 1:1812591/1‑86 (MQ=255) tGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCCAATGC‑TTTTTTTCa > 2:131882/1‑90 (MQ=255) tGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGGTGC‑CTTTTATCa > 2:411652/1‑90 (MQ=255) tGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGC‑tttttttta > 2:669571/1‑86 (MQ=255) tGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATTC‑TTTTTATCa > 2:2069403/1‑90 (MQ=255) ccGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGTCGGGGGAAACCAGATGC‑TTTTTATCAAAt < 2:1836041/90‑1 (MQ=255) ccGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGTCGGGGGAAACCAGATGC‑TTTTTATCAAAt < 2:1282705/90‑1 (MQ=255) ccGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGAATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAAt < 1:1204878/90‑1 (MQ=255) cGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGTTGG‑TTTTTTTTaaaaa > 1:140912/1‑88 (MQ=255) cGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGAAGG‑TTTTTTTTaaaaa > 1:2021420/1‑88 (MQ=255) gTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGG‑TTTTTTTCAAATaa > 2:687861/1‑90 (MQ=255) gTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGC‑TTTTTTTTAAATaa > 2:848242/1‑90 (MQ=255) tGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGC‑TTTTTTTTAaaaaaaa > 2:533802/1‑89 (MQ=255) aCCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAAAAGC‑TTTTTTTTAAATAAAATc > 2:1076567/1‑90 (MQ=255) gCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGC‑TTTTTTTCAAAAAAAATCATg > 2:211626/1‑90 (MQ=255) gCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGC‑TTTTTTTCAAAAAAAATCATg > 2:544897/1‑90 (MQ=255) gCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGAAGG‑TTTTTTTTTAATAAAATCATg > 1:1907763/1‑90 (MQ=255) gCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAAAAGC‑TTTTTTTTAAAAAAAATCATg > 1:994577/1‑90 (MQ=255) aTGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGgt < 2:1993970/90‑1 (MQ=255) tGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGAt > 1:1810338/1‑64 (MQ=255) tGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGAt > 1:1282633/1‑64 (MQ=255) tGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGAAGG‑TTTTTTTTAAATAAAATCATgggg > 1:1785802/1‑88 (MQ=255) tGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGAt < 2:1282633/64‑1 (MQ=255) tGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGAt < 2:1810338/64‑1 (MQ=255) aGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGG‑TTTTTTTTAAATAAAATCATGGGGTCg > 1:1888348/1‑90 (MQ=255) gCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGC‑TTTTTATCAAATAAAATCCTGGGGTCGc > 2:1602037/1‑90 (MQ=255) gCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGc > 2:1501291/1‑90 (MQ=255) gCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGAGGC‑TTTTTTTCAAAAAAAATCATGGGGTCGc > 2:865577/1‑90 (MQ=255) gTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGctc < 1:1153154/90‑1 (MQ=255) gTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGctc < 1:1112764/90‑1 (MQ=255) tGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGC‑TTTTTATCAAATAAACTCATGGTGTTGcgct > 2:1913069/1‑90 (MQ=255) ggCTACGGGCATCGAGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGC‑TTTTTATCAAAAAAACTCATGGGGTTGCtctc > 2:1835528/1‑90 (MQ=255) gCTACGGGCATAGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTcc < 2:291879/90‑1 (MQ=255) aCGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGG‑TTTTTTTTAAAAAAAATCATGGGGTCGCTCTcccca > 1:1164957/1‑88 (MQ=255) aCGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGa > 2:2010296/1‑90 (MQ=255) aCGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGC‑TTTTTTTCAAAAAAAATCATGGGGGCGCTCTCCCGa > 2:164373/1‑90 (MQ=255) gggCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGC‑TTTTTTTTAAATAAACTCATGGGGTCGCTCTCCCGaaa > 2:1688003/1‑90 (MQ=255) aTCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGG‑TTTTTTTTAAAAAAATTCCTTGTGTCGCTCTCCCCGAAATct > 2:1328693/1‑89 (MQ=255) aTCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGC‑TTTTTTTTAAATAAAATCATGGGGTCGCTCTCCCCAAAAACg > 2:524912/1‑90 (MQ=255) aTCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGAAGG‑TTTTTTTTAAAAAAAATCATGGTGTCGCTCTCCCGAAAAACg > 1:1886056/1‑90 (MQ=255) ggTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAt < 2:898485/90‑1 (MQ=255) gtgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt < 2:970072/90‑1 (MQ=255) gtgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt < 1:1152367/90‑1 (MQ=255) gtgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt < 1:1835528/90‑1 (MQ=255) gtgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt < 1:175011/90‑1 (MQ=255) gtgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt < 1:131882/90‑1 (MQ=255) gtgtGACGTCCAGGCAGGGCATCGGCGGGGGAAACCATATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt < 1:2020373/90‑1 (MQ=255) tgtTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGC‑TTTTTTTCAAATAAACTCATGGGGTCGCTCTCCCGAAAATCGGTCATTg > 2:1123426/1‑90 (MQ=255) tgtTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGC‑TTTTTTTCAAATAAAATCATGGTGTCGCTCTCCCGAAAAACGGGCATTg > 2:175011/1‑90 (MQ=255) tgtTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGC‑TTTTTTTCAAATAAACTCATGGGGTCGCTCTCCCGAAAATCGGTCATTg > 2:273208/1‑90 (MQ=255) tgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATTC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTg < 1:101253/90‑1 (MQ=255) tgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt < 2:1999346/90‑1 (MQ=255) tgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTg < 2:169928/90‑1 (MQ=255) tgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTg < 2:2009999/90‑1 (MQ=255) tgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTg < 2:1823099/90‑1 (MQ=255) tgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTg < 2:1549514/90‑1 (MQ=255) gtTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGAAGG‑TTTTTTTTAAAAAAAATCATGGGGTCGCTCTCCCGAAAAACGGGCAtttg > 1:239948/1‑88 (MQ=255) aCGTCCAGGCAGGGCATCGGCGGGGGAAAACAGATGC‑TTTTTTTCAAAAAAACTCATGGGGTCGCTCTCCCGAAAAACGGGCATTggggg > 2:1441156/1‑89 (MQ=255) gTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTa < 1:1018405/90‑1 (MQ=255) gTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTa < 2:85743/90‑1 (MQ=255) gTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTa < 1:1688003/90‑1 (MQ=255) tCCAGGCAGGGCATCGGCGGGGGGAAACAGATGCTTTTTTTTTAAAAAAAATCATGGGGTCGCTCTCCCCAAAAACGGTCATTTGGGTTa > 1:1999346/1‑90 (MQ=255) caggcaggGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAgg < 1:1425069/90‑1 (MQ=255) aggcaggGCATCGGCGGGGGGAAACAGATGC‑TTTTTTTTAAAAAAAATCATGGGGGGGCTCTCCCCGAAAACGGGCGTTTGGGTTAAggg > 1:912600/1‑89 (MQ=255) aggcaggGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGt < 1:848242/90‑1 (MQ=255) ggcaggGCATCGGCGGGGGGAACCAGAAGC‑TTTTTTTTAAAAAAAATCATGGGGTCGCTCTCCCCAAAAACGGTCATTTGGGGTAAgggt > 1:2002173/1‑88 (MQ=255) ggcaggGCATCGGCGGGGGGAAACAGATTC‑TTTTTTTTAAATAAAAGCATGGGGGGGCTCTCCCGAAAAACGGGCATTTGGGGTAAAGtt > 1:59583/1‑90 (MQ=255) ggcaggGCATCGGCGGGGGGAAACAGATGC‑TTTTTTTTAAATAAAATCATGGGGTGGCTCTCCCGAAAAACGGGCATTGGGGGTAAgggt > 1:747536/1‑88 (MQ=255) gcaggGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTg < 2:994577/90‑1 (MQ=255) gggCATCGGCGGGGGGAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTaa > 2:599941/1‑90 (MQ=255) gggCATCGGCGGGGGGAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTaa > 2:1800460/1‑90 (MQ=255) gggCATCGGCGGGGGGAAACAGATGC‑TTTTTTTTAAAAAAAATCATGGGGTCGCTCTCCCCAAAAACGGGCATTTGGGGTAAGGCTGtct > 1:1597727/1‑88 (MQ=255) gggCATCGGCGGGGGGAAACAGATGC‑TTTTTTTCAAAAAAAATCATGGGGGCGCTCTCCCCAAAAACGGGCATTTGGGGTAAGGTTGTaa > 1:1661538/1‑90 (MQ=255) gggCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAAATCATGGGGTCGCTCTCCCCAAAATCGGTCATTGGGGTTAAGGTTTTaa > 2:2101618/1‑90 (MQ=255) gCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACa < 2:1395014/90‑1 (MQ=255) tCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAaga < 1:1328693/90‑1 (MQ=255) gcggGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGc < 1:871962/90‑1 (MQ=255) ggggggAACCAGATGC‑TTTTTTTTAAAAAAAATCATGGTGTCGCTCTCCCGAAAAACGGGCATTGGGGGTAAGGTTGTAACAAGAGGCGt > 1:1367911/1‑90 (MQ=255) gggggAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGt < 2:377623/90‑1 (MQ=255) gggggAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGt < 1:164373/90‑1 (MQ=255) ggAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTAtt < 1:673962/90‑1 (MQ=255) aaaCCAGATGCTTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTAttt > 1:825604/1‑90 (MQ=255) | AGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGC‑TTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTT > NZ_CP009273/4431874‑4432051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |