Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP009273822,9550TG51.2% 24.7 / 37.0 41T495P (ACC→CCC) ybhFATP‑binding cassette domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (3/17);  new base G (21/0);  total (24/17)
Fisher's exact test for biased strand distribution p-value = 7.52e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.21e-08
Rejected as consensus: Frequency below/above cutoff threshold.

TTCCGCTTCATCCATAAAGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAACAGGCCAGCGCCAGCCGCTGTTTAA  >  NZ_CP009273/822866‑823044
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ttCCGCTTCATCCATAAAGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGAGt                                                                                            >  1:1510419/1‑90 (MQ=255)
     cTTCATCCATAAAGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGgggggggg                                                                                       >  2:816500/1‑90 (MQ=255)
     cTTCATCCATAAAGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGTGAggg                                                                                       <  1:1017514/90‑1 (MQ=255)
     cTTCATCCATAAAGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGTGAggg                                                                                       <  1:997703/90‑1 (MQ=255)
         aTCCATAAAGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGgggggggggggg                                                                                   >  2:1283168/1‑88 (MQ=255)
         aTCCATAAAGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGgggggggggggg                                                                                   >  1:1896513/1‑88 (MQ=255)
         aTCCATAAAGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGAggggggg                                                                                   >  1:1139225/1‑88 (MQ=255)
                 aGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGACgg                                                                           <  1:791953/90‑1 (MQ=255)
                    gggtggTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGCCACGACGGAAg                                                                        >  2:750589/1‑90 (MQ=255)
                    gggtggTGACCATCACCGTGACGCCTTTCTCGACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGGAACGCCGGGAg                                                                        >  2:1239557/1‑90 (MQ=255)
                           gACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGGAAAGCCGGGAGGCggggc                                                                 >  2:1401034/1‑87 (MQ=255)
                                tCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGGGAAGCCGGGAGGCGGGgcgtcgg                                                            >  1:534664/1‑89 (MQ=255)
                                   ccGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGGAACGCCGGGAGTCGGGTCGTCGAGaa                                                         >  2:320666/1‑90 (MQ=255)
                                       gACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAg                                                     <  1:836225/90‑1 (MQ=255)
                                       gACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGGAAAGCCCGGAGGCGGGTCGTCGAGaaaaaa                                                     >  1:159796/1‑87 (MQ=255)
                                            cTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGCAACGCCGGGAGGCGGGTCGTCGAGGAAAAGAAAGt                                                >  2:124702/1‑90 (MQ=255)
                                                ctctACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGAGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCgg                                           <  2:1510419/90‑1 (MQ=255)
                                                      cATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGCGAAGCCCGAAGGCGGGTCGTCGGGAAAAAAAAAGTACCGGTTctg                                      >  1:228042/1‑88 (MQ=255)
                                                       aTGCTGTTGATGTGCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGc                                    <  2:228042/90‑1 (MQ=255)
                                                       aTGCTGTTGATGTGCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGc                                    <  1:2135301/90‑1 (MQ=255)
                                                       aTGCTGTTGATGTGCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGc                                    <  1:649455/90‑1 (MQ=255)
                                                       aTGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGCAACGCCCGAAGTCGGGTCGTCGAGAAAAAAAAAGTCCCGGTCATGc                                    >  2:107278/1‑90 (MQ=255)
                                                       aTGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGCAAAGCCGGGAGGCGGGTCGTCGAGAAAAAGAAAGTCCGGGTCATgg                                    >  1:1977453/1‑89 (MQ=255)
                                                       aTGCTGTTGATGTGCAGCCAAAATTCACGGAGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGc                                    >  1:1002589/1‑90 (MQ=255)
                                                        tGCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGGAACGCCGGGAGGCGGGTCGTCGAGAAAAAGAAAGTCCGGGTCATGCa                                   >  2:88372/1‑90 (MQ=255)
                                                         gCTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGGAACGCCCGGAGGCGGGTCGTCGGGAAAAAGAAAGTTCGGGTTATgggt                                  >  1:1559549/1‑87 (MQ=255)
                                                          cTGTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGGAAAGCCGGGAATCGGGTTGTCGGGGAAAAGAAAGTTCGGGTGATGCaac                                 >  2:1719171/1‑88 (MQ=255)
                                                            gTTGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGCAACGCCCGGAGGCGGGTCGTCGGGAAAAAAAAAGTCCGGGTCATGCATCAg                               >  2:791548/1‑90 (MQ=255)
                                                              tGATGTGCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCg                             <  1:534357/90‑1 (MQ=255)
                                                              tGATGTGCAGCCAAAATTCACGGCGGGGGGGGGGGGGAAAGCCGGAAGTCGGGTCGTCGAGAAAAAGAATGTCCGGGTCTTGCATCAGCg                             >  2:135991/1‑90 (MQ=255)
                                                                 tgttCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAAc                          <  2:128428/90‑1 (MQ=255)
                                                                 tgtgCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAAc                          <  2:1828000/90‑1 (MQ=255)
                                                                 tgtgCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAAc                          <  2:1978776/90‑1 (MQ=255)
                                                                    gCAGCCAAAATTCACGTCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAACAgg                       >  1:1209667/1‑90 (MQ=255)
                                                                    gCAGCCAAAATTCACGGCGGGTGAGGGGGGCAACGCCGGAAGTGGGGTCTTCGTGAAAAAAAAAGGCCGGCTCCTGCCACAGCGGACaag                       >  1:1828000/1‑88 (MQ=255)
                                                                    gCAGCCAAAATTCACGGCGGGGGGGGGGGGCAACGCCGGAAGGCGGGTCGGCGGGAAAAAGAAAGGCCGGGTCCTGCATCAGCGAACaag                       >  1:701814/1‑88 (MQ=255)
                                                                    gCAGCCAAAATTCACGGCGGGGGAGGGGGGGAACGCCGGAAGTCGGGTCGTCGAGAAACAAAAAGTCCGGGTCATGCATCAGCGGACaag                       >  1:426024/1‑88 (MQ=255)
                                                                      aGCCAAAATTCACGGCGGGGGGGGGGGGGAACGCCGGGAGGCGGGTCGTCGAGAAAAAAAAAGTCCGGGTCATGCATCAGCGGACAgggc                     >  1:548701/1‑88 (MQ=255)
                                                                      aGCCAAAATTCACGGCGGGGGGGGGGGGCAACGCCCGGAGGCGGGTCGTCGAGAAAAAGAAAGGTCGGGTCATGCCTCCGCGGACAGgcc                     >  1:1182850/1‑90 (MQ=255)
                                                                                  cggcggGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAACAGGCCAGCGCCAGCCGc         <  1:169800/90‑1 (MQ=255)
                                                                                  cggcggGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAACAGGCCAGCGCCAGCCGc         <  1:1283168/90‑1 (MQ=255)
                                                                                  cggcggGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAACAGGCCAGCGCCAGCCGc         <  1:471646/90‑1 (MQ=255)
                                                                                  cggcggGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGATCATGCATCAGCGAACAGGCCAGCGCCAGCCGc         <  2:534664/90‑1 (MQ=255)
                                                                                     cggGGGGGGGGGGCAACCCCGGGAGTCGGGTTGTCGAGGAAAAGAAAGTCCGGGTCATGCATCAGCGAACAGGCCACCGCCCGCCGCCGt      >  2:1018213/1‑90 (MQ=255)
                                                                                       ggTGAGGGGGTCAACGACGGAAGTAGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAACAGGCCAGCGCCAGCCGCTGttt    <  1:750589/90‑1 (MQ=255)
                                                                                         tGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAACAGGCCAGCGCCAGCCGCTGTTTaa  <  2:1948968/90‑1 (MQ=255)
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TTCCGCTTCATCCATAAAGTGGGTGGTGACCATCACCGTGACGCCTTTCTCTACCATGCTGTTGATGTGCAGCCAAAATTCACGGCGGGTGAGGGGGTCAACGCCGGAAGTCGGTTCGTCGAGAAACAGAATGTCCGGTTCATGCATCAGCGAACAGGCCAGCGCCAGCCGCTGTTTAA  >  NZ_CP009273/822866‑823044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: