New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 3717977 = | 7 (0.630) | 3 (0.310) | 3/144 | 0.9 | 33.3% | coding (702/912 nt) | glyQ | glycine‑‑tRNA ligase subunit alpha |
? | NZ_CP009273 | 3717989 = | 6 (0.630) | coding (690/912 nt) | glyQ | glycine‑‑tRNA ligase subunit alpha |
GAATACGCGGATGTGGACTTCCTGTTCACCTGCTTCGAGCAGTACGAGAAAGAAGCGCAGCAGCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3718045‑3717977 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagctgctgCGCTTCTTTCTCGTACTGCTCGAAGCAGGTGAACAGGAAGTCCACATCCGCGTATTC > NZ_CP009273/3717989‑3718045 GAATACGCGGATGTGGACTTCCTGTTCACCTGCTTCGAGCAGTACGAGAAAGAAGCGCAGCAGCTGCTGCGCTTCTTTCTCGTACTGCTC < 1:222305/90‑1 GATGTGGACTTCCTGTTCACCTGCTTCGAGCAGTACGAGAAAGAAGCGCAGCAGCTGCTGCGCTTCTTTCTCGTACTGCTCGAAGCAGGT < 2:181548/90‑1 GAGCAGTACGAGAAAGAAGCGCAGCAGCTGCTGCGCTTCTTTCTCGTACTGCTCGAAGCAGGGGAACAGGGAGTCCACATCCGCGTATTC > 1:314331/1‑90 GAATACGCGGATGTGGACTTCCTGTTCACCTGCTTCGAGCAGTACGAGAAAGAAGCGCAGCAGCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3718045‑3717977 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagctgctgCGCTTCTTTCTCGTACTGCTCGAAGCAGGTGAACAGGAAGTCCACATCCGCGTATTC > NZ_CP009273/3717989‑3718045 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |