Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1353501	1353517	17	3 [1]	[0] 2	BW25113_RS25565	protein YmjE

TCAGTGGTGAATTAATAGCCATAATTGCTGCCTCCCCTGCGTAATAAGGTTTGCGGTCGTGTCGACCTGAAATCAAACCTGTTTAGCAAG  >  NZ_CP009273/1353423‑1353512                                                                              |             tCAGTGGTGAATTAATAGCCATAATTGCTGCCTCCCCTGCGTAATAAGGTTTGCGGTCGTGTCGACCTGAAATCAAACCTGTTTAGCAAg  <  1:77468/90‑1 (MQ=255)                                            ataaGGTTTGCGGTCGTGTCGACCTGAAATCAAAc              <  1:138950/35‑1 (MQ=255)                                            ataaGGTTTGCGGTCGTGTCGACCTGAAATCAAAc              >  2:138950/1‑35 (MQ=255)                                                                              |             TCAGTGGTGAATTAATAGCCATAATTGCTGCCTCCCCTGCGTAATAAGGTTTGCGGTCGTGTCGACCTGAAATCAAACCTGTTTAGCAAG  >  NZ_CP009273/1353423‑1353512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑