Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2288373	2288404	32	2 [1]	[0] 2	[ccmF]–[ccmE]	[ccmF],[ccmE]

CGCGCATCTCCGCGCGCCACGCCCCATAGCGGATACACGGACAGCAGCAGCGCAATTCCCAGCGCCAGGCACAGCAGTCCGTTACCAATTTCTGGCATCATGATGCTGGGTCCTTATAAAC  >  NZ_CP009273/2288283‑2288403                                                                                          |                                cgcgcATCTCCGCGCGCCACGCCCCATAGCGGATACACGGACAGCGGCAGCGCAATTCCCAGCGCCAGGCACAGCAGTCCGTTACCAAtt                                 <  1:275002/90‑1 (MQ=255)                                gATACACGGACAGCAGCAGCGCAATTCCCAGCGCCAGGCACAGCAGTCCGTTACCAATTTCTGGCATCATGATGCTGGGTCCTTATAAac  >  1:320981/1‑90 (MQ=255)                                                                                          |                                CGCGCATCTCCGCGCGCCACGCCCCATAGCGGATACACGGACAGCAGCAGCGCAATTCCCAGCGCCAGGCACAGCAGTCCGTTACCAATTTCTGGCATCATGATGCTGGGTCCTTATAAAC  >  NZ_CP009273/2288283‑2288403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑