Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1241726	1241781	56	2 [1]	[0] 2	treA	alpha,alpha‑trehalase

CGCGGGCGAGGATTTTTTCCATTTTAAACATCAGGC  >  NZ_CP009273/1241782‑1241817 |                                    cgcgGGCGAGGATTTTTTCCATTTTAAACATCAGGc  <  1:292515/36‑1 (MQ=255) cgcgGGCGAGGATTTTTTCCATTTTAAACATCAGGc  >  2:292515/1‑36 (MQ=255) |                                    CGCGGGCGAGGATTTTTTCCATTTTAAACATCAGGC  >  NZ_CP009273/1241782‑1241817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑