New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	360104 =	NA (NA)	26 (1.210)	17/164	0.2	68.4%	intergenic (‑35/+251)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
	?	NZ_CP009273	= 360286	12 (0.560)					intergenic (‑217/+69)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein

CGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360018‑360193                                                                                       |                                                                                           cGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt                                                                                         >  2:603171/1‑90 (MQ=255)    ttGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCt                                                                                      >  1:80283/1‑90 (MQ=255)      gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                    <  1:639389/90‑1 (MQ=255)                                    cAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCAcc                                                     <  2:248001/90‑1 (MQ=255)                                      gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCTGccccccccccc                                                   >  2:40526/1‑89 (MQ=39)                                               cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGt                                          <  2:115563/90‑1 (MQ=255)                                                tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                    <  2:532287/48‑1 (MQ=255)                                                tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                    >  1:532287/1‑48 (MQ=255)                                                tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCTCCCCCCCCCCCCCCGGGCCGt                                          >  1:297683/1‑90 (MQ=255)                                                tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCGCCCCCCCCCCCCCCGGcccct                                         >  1:540270/1‑87 (MQ=255)                                                tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCGCCCCCCCCCCCCCCGGCCgct                                         >  2:646656/1‑88 (MQ=37)                                                tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCCGCCCCCCCCCCCCCCGGCCggt                                         >  1:172343/1‑88 (MQ=37)                                                       atAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGc                                  <  1:646656/90‑1 (MQ=255)                                                         aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCaa                                <  2:502404/90‑1 (MQ=255)                                                              gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggc‑ggg                                                                     <  1:63221/48‑1 (MQ=255)                                                              gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggc‑ggg                                                                     >  2:63221/1‑48 (MQ=255)                                                                        agaATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCGCCCCCCCCCCCCCCCGCCGCTGCTTCCCCACCTTCCAAAcccccc                 >  2:651044/1‑86 (MQ=12)                                                                             tCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc            <  2:297683/90‑1 (MQ=255)                                                                                     ccAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt    <  1:40526/90‑1 (MQ=38)                                                                                       aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:412120/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:38520/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:218929/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:540270/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:208977/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:124602/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:80283/90‑1 (MQ=35)                                                                                       |                                                                                           CGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360018‑360193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.