| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 270859 | NA (NA) | 26 (1.220) | 21/162 | 0.1 | 96.3% | intergenic (‑67/‑177) | BW25113_RS01325/mmuP | IS5‑like element IS5 family transposase/S‑methylmethionine permease |
| ? | NZ_CP009273 | = 481485 | 1 (0.050) | coding (269/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
TGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTG > NZ_CP009273/481396‑481574 | tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAag > 2:30534‑M1/86‑90 (MQ=255) cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAagag > 2:406450‑M1/84‑90 (MQ=255) gaTCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaa < 2:612785‑M2/90‑4 (MQ=255) gaTCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaa > 1:612785‑M2/1‑87 (MQ=255) cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAGAGAGATATTAATTCa > 2:372355‑M1/71‑90 (MQ=255) tCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagt > 2:321089‑M2/1‑74 (MQ=255) ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAGAGAGATATTAATTCAt < 2:67229‑M1/21‑1 (MQ=255) gAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccc > 2:614274‑M2/1‑71 (MQ=255) cAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgata > 2:566677‑M2/1‑66 (MQ=255) cAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgata > 2:109617‑M2/1‑66 (MQ=255) ggTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagt > 1:112312‑M2/1‑59 (MQ=255) ggTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagt < 2:112312‑M2/75‑17 (MQ=255) gTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatca > 2:299191‑M2/1‑58 (MQ=255) gAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgata < 1:35683‑M2/80‑25 (MQ=255) gAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgata > 2:35683‑M2/1‑56 (MQ=255) tAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttg > 2:198489‑M2/1‑52 (MQ=255) agagCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgt < 1:36774‑M2/90‑40 (MQ=255) ttGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct < 2:79940‑M2/90‑45 (MQ=255) ttGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct > 2:159093‑M2/1‑46 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccTTAAGAGAGATATTAAtt > 2:223821‑M1/36‑53 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccTTAAGAGAGATATTAAtt < 1:223821‑M1/18‑1 (MQ=255) cAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 2:241025‑M2/1‑38 (MQ=255) cAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa > 1:273018‑M2/1‑34 (MQ=255) aaaTTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 1:467892‑M2/1‑32 (MQ=255) aaTTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggggccatagaacag > 1:316053‑M2/1‑31 (MQ=255) gATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg > 2:162580‑M2/1‑20 (MQ=255) aCTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca > 1:6637‑M2/1‑15 (MQ=255) aCTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca < 1:312399‑M2/90‑76 (MQ=255) tctcAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt > 2:285014‑M2/1‑13 (MQ=255) tctcAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt < 1:285014‑M2/75‑63 (MQ=255) ttccTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATg < 1:582765‑M1/86‑1 (MQ=255) ttAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc < 1:112028‑M2/90‑86 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc < 1:299136‑M2/90‑89 (MQ=255) ggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg < 1:109812‑M2/90‑90 (MQ=255) gagagaTATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTg > 2:175415/1‑90 (MQ=255) | TGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTG > NZ_CP009273/481396‑481574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |