Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1290578	1290582	5	2 [0]	[0] 2	BW25113_RS06460	IS4 family transposase

GCTGACGCGCCTGGGTGACAGCGCTGCGGGCCAGCAGGTTCATCCCCGCTTCGCCATCCGCGCTCAGGTTCAGACGGCGAACA  >  NZ_CP009273/1290495‑1290577                                                                                   | gcTGACGCGCCTGGGTGACAGCGCTGCGGGCCAGCAGGTTCATCCCAGCTTCGCCATCCGCGCTCAGGTTCAGACGGCGaaca  <  1:404041/83‑1 (MQ=255) gcTGACGCGCCTGGGTGACAGCGCTGCGGGCCAGCAGGTTCATCCCAGCTTCGCCATCCGCGCTCAGGTTCAGACGGCGaaca  >  2:404041/1‑83 (MQ=255)                                                                                   | GCTGACGCGCCTGGGTGACAGCGCTGCGGGCCAGCAGGTTCATCCCCGCTTCGCCATCCGCGCTCAGGTTCAGACGGCGAACA  >  NZ_CP009273/1290495‑1290577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑