Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 832,048 | 0 | T | G | 58.3% | 4.1 / 10.8 | 12 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
Reads supporting (aligned to +/- strand): ref base T (2/3); new base G (7/0); total (9/3) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.55e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GATCCCAAGCTATGTACGCTCCTGGAGTCAGGGGCACCTGCAAATTAACCATCATGCCAAAACCGTTAAAGAGGCGGGGGCGGCGGTCACGCTCGATGGCGATCGCGCATTTGGTCAGGTCGCGGCACATGAAGCGATGGCGCTGGGGATTGAGAAAGCGCATCAGCACGGT > NZ_CP009273/831962‑832133 | gATCCCAAGCTATGTACGCTCCTGGAGTCAGGGGCACCTGCAAATTAACCATCATGCCAAAACCGTTAAAGAGGCGGGGGGGGGGGGCAc > 2:404613/1‑90 (MQ=255) gATCCCAAGCTATGTACGCTCCTGGAGTCAGGGGCACCTGCAAATTAACCATCATGCCAAAACCGTTAAAGAGGCGGGGGGGGGGGGCAc > 2:567750/1‑90 (MQ=255) gATCCCAAGCTATGTACGCTCCTGGAGTCAGGGGCACCTGCAAATTAACCATCATGCCAAAACCGTTAAAGAGGCGGGGGGGGCGGGCAc > 1:85282/1‑90 (MQ=255) gATCCCAAGCTATGTACGCTCCTGGAGTCAGGGGCACCTGCAAATTAACCATCATGCCAAAACCGTTAAAGAGGCGGGGGCGGCGGt > 1:590337/1‑87 (MQ=255) gATCCCAAGCTATGTACGCTCCTGGAGTCAGGGGCACCTGCAAATTAACCATCATGCCAAAACCGTTAAAGAGGCGGGGGCGGCGGt < 2:590337/87‑1 (MQ=255) cAGGGGCACCTGCAAATTAACCATCATGCCAAAACCGTTAAAGAGGCGGGGGGGGCGGGCACGCCCGGTGGCGATCGCGCCTTTTGTCAg > 2:176029/1‑90 (MQ=255) catGCCAAAACCGTTAAAGAGGCGGGGGGGGCGGGCCCCCCCCACGGCGAACCCGCCTTTTGTCAGGGGGGGGCGCCAGAAGCGGTGgcg > 2:478131/1‑90 (MQ=255) gTTAAAGAGGCGGGGGCGGCGGTCACGCTCGATGGCGATCGCGCATTTGGTCAGGTCGCGGCACATGAAGCGATGGCGCTg > 1:117499/1‑81 (MQ=255) gTTAAAGAGGCGGGGGCGGCGGTCACGCTCGATGGCGATCGCGCATTTGGTCAGGTCGCGGCACATGAAGCGATGGCGCTg < 2:117499/81‑1 (MQ=255) gTTAAAGAGGCGGGGGCGGCGGGCACGCTCGATGGCGGTCGCGCCTTTTGGCAGGGCGCGGGACATGAAGCGATGGCGCTGGGGGTTgag > 1:608695/1‑90 (MQ=255) gTTAAAGAGGCGGGGGCGGCGGGCACGCCCCATGGCGATCGCGCCTTTGGTCCGGGCGCGGGACATGAAGCGGTGGGGCTGGGGGTTggg > 1:69173/1‑88 (MQ=255) agagGCGGGGGCGGCGGTCACGCTCGATGGCGATCGCGCATTTGGTCAGGTCGCGGCACATGAAGCGATGGCGCTGGGGATTGAGAAAgc < 1:597140/90‑1 (MQ=255) agagGCGGGGGCGGCGGTCACGCTCGATGGCGATCGCGCATTTGGTCAGGTCGCGGCACATGAAGCGATGGCGCTGGGGATTGAGAAAgc < 2:85282/90‑1 (MQ=255) gcggTCACGCTCGATGGCGATCGCGCATTTGGTCAGGTCGCGGCACATGAAGCGATGGCGCTGGGGATTGAGAAAGCGCATCAGCACGGt > 1:310961/1‑90 (MQ=255) | GATCCCAAGCTATGTACGCTCCTGGAGTCAGGGGCACCTGCAAATTAACCATCATGCCAAAACCGTTAAAGAGGCGGGGGCGGCGGTCACGCTCGATGGCGATCGCGCATTTGGTCAGGTCGCGGCACATGAAGCGATGGCGCTGGGGATTGAGAAAGCGCATCAGCACGGT > NZ_CP009273/831962‑832133 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |