| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,551,119 | 0 | A | C | 62.5% | 9.4 / 13.0 | 16 | T80P (ACC→CCC) | osmC | peroxiredoxin OsmC |
| Reads supporting (aligned to +/- strand): ref base A (5/1); new base C (0/10); total (5/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.37e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.53e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGAAAATCGCACTGAAGAGTGAAGTTGCGGTGCCGGGT > NZ_CP009273/1551043‑1551205 | agcgcaTGCCGCATGTTTCTAAATGGCGTTTTCATTAATGCTGGGGGAAGGGGGATTCACGCCAACATCGATTGATCCCACCGCCGAtgt < 2:571440/90‑1 (MQ=255) gcgcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGAtgtg > 2:37187/1‑90 (MQ=255) aTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAGGGGGGATTCACGCCAACATCGATTGATCCCACCGCCGATGTGTCGc < 2:75564/90‑1 (MQ=255) tGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGATGTGTCGCt > 1:89151/1‑90 (MQ=255) ttCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGATGTGTCGCTGGATAAAGTg > 2:649446/1‑90 (MQ=255) aagggCGCTTTCATTAAGGCTGGGGGAAGGGGGATCCACGCCAACATCGATTGATCCCCCCGCCGATGTGTCGCTGGATAAAGTGGATGc < 2:320438/87‑1 (MQ=255) aaTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCTGATGTGTCGCTGGATAAAGTGGATGc < 2:215232/90‑1 (MQ=255) aTGCTGGGGGAAGGGGGATTCACGCCAACATCGATTGATCCCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACg < 1:325078/90‑1 (MQ=255) gggggggAGGCGGAATTCCCCCCAACATCGATTGACCCCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGaaa < 2:473791/88‑1 (MQ=255) gggggAGGGGGGTTTCACCCCAACATCGTTTGATCCCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGAAAAt < 2:241967/90‑1 (MQ=255) gacggggATTCACCCCAACATCGTTTAATCCCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGAAAATCGCAc < 2:321162/86‑1 (MQ=255) aaGGGGGATTCCCGCCAACATCGATTGATCCCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGAAAATCGCAc < 1:358415/90‑1 (MQ=255) aaCATGGATTGATCCCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGAAAATCGCACTGAAGAGTGAAGTTGc < 2:345442/90‑1 (MQ=255) aCATCGATTGATACCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGAAAATCGCACTGAAGAGTGAAGTTGCg > 2:129807/1‑90 (MQ=255) cgtttGATCCCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGAAAATCGCACTGAAGAGTGAAGTTGCGGTGc < 2:458505/87‑1 (MQ=255) gATACCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGAAAATCGCACTGAAGAGTGAAGTTGCGGTGCCGGGt > 2:568961/1‑90 (MQ=255) | AGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGATGTGTCGCTGGATAAAGTGGATGCCGGTTTTGCGATTACGAAAATCGCACTGAAGAGTGAAGTTGCGGTGCCGGGT > NZ_CP009273/1551043‑1551205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |