Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2099580	2099600	21	3 [0]	[2] 3	wzy	O16 family O‑antigen polymerase

AAGAGTTATTTGTATCCAACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGA  >  NZ_CP009273/2099589‑2099690             |                                                                                          aaGAGTTATTTGTATCCAACTGCTAATATTAGTCATGAAGCTTTCATGATaa                                                    >  1:585768/1‑52 (MQ=255) aaGAGTTATTTGTATCCAACTGCTAATATTAGTCATGAAGCTTTCATGATaa                                                    <  2:585768/52‑1 (MQ=255)             tATCCAACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGa  >  1:339934/1‑90 (MQ=255)             |                                                                                          AAGAGTTATTTGTATCCAACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGA  >  NZ_CP009273/2099589‑2099690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑