Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3576006	3576032	27	4 [0]	[1] 2	hcp	Hcp1 family type VI secretion system effector

TAAATAGTTACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGTATAGAC  >  NZ_CP009273/3575950‑3576005                                                        | taaataGTTACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGTATAGAc  >  1:309684/1‑56 (MQ=255) taaataGTTACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGTATAGAc  <  2:309684/56‑1 (MQ=255)         tACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGTATAGAc  >  1:669996/1‑48 (MQ=255)         tACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGTATAGAc  <  2:669996/48‑1 (MQ=255)                                                        | TAAATAGTTACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGTATAGAC  >  NZ_CP009273/3575950‑3576005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑