Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4487821	4487864	44	3 [0]	[1] 2	BW25113_RS22170/BW25113_RS22180	tyrosine‑type recombinase/integrase/IS3‑like element IS2 family transposase

AAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACG  >  NZ_CP009273/4487731‑4487820                                                                                          | aaGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACg  <  1:51111/90‑1 (MQ=255)                                        aaTGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACg  >  1:539264/1‑51 (MQ=255)                                        aaTGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACg  <  2:539264/51‑1 (MQ=255)                                                                                          | AAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACG  >  NZ_CP009273/4487731‑4487820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑