Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3794405	3794453	49	3 [1]	[0] 2	rfaJ	lipopolysaccharide 1,2‑glucosyltransferase RfaJ

TTTCGCATCTCGTGGAGAGTCATCTTTCCAGGGGGAATTTTCTAAAGCTATTTTAT  >  NZ_CP009273/3794454‑3794509 |                                                        tttCGCATCTCGTGGAGAGTCATCTTTCCAGGGGGAATTTTCTAAAGCTATTTtat  <  1:383218/56‑1 (MQ=255) tttCGCATCTCGTGGAGAGTCATCTTTCCAGGGGGAATTTTCTAAAGCTATTTtat  >  2:383218/1‑56 (MQ=255) |                                                        TTTCGCATCTCGTGGAGAGTCATCTTTCCAGGGGGAATTTTCTAAAGCTATTTTAT  >  NZ_CP009273/3794454‑3794509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑