Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3797692	3797757	66	2 [0]	[0] 2	rfaS	LPS core biosynthesis protein RfaS

GCCTCAAGTATACGAAGAGTCCAGCCAGATTGGTTTTCTT  >  NZ_CP009273/3797758‑3797797 |                                        gCCTCAAGTATACGAAGAGTCCAGCCAGATTGGTTTTCtt  <  1:601045/40‑1 (MQ=255) gCCTCAAGTATACGAAGAGTCCAGCCAGATTGGTTTTCtt  >  2:601045/1‑40 (MQ=255) |                                        GCCTCAAGTATACGAAGAGTCCAGCCAGATTGGTTTTCTT  >  NZ_CP009273/3797758‑3797797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑