Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3996503	3996577	75	2 [1]	[1] 3	BW25113_RS19825	hypothetical protein

CTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGC  >  NZ_CP009273/3996577‑3996666  |                                                                                         ctcCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGc  >  1:552435/1‑90 (MQ=255)  tcCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGc                                               <  1:640548/44‑1 (MQ=255)  tcCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGc                                               >  2:640548/1‑44 (MQ=255)  |                                                                                         CTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGC  >  NZ_CP009273/3996577‑3996666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑