| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,976,010 | 0 | C | A | 55.6% | ‑0.8 / 12.5 | 9 | intergenic (‑142/+25) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| Reads supporting (aligned to +/- strand): ref base C (1/3); new base A (5/0); total (6/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.17e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGC‑GGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAG > NZ_CP009273/1975939‑1976091 | gtgtGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGC‑GGTTGGGTATGGTGGGGAAAAAAACTAAAATGTTTGAGaaa > 1:180746/1‑90 (MQ=255)gtgtGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGC‑GGTTGGGTATGGGGGGGAAAAAAACAAAAATTTTGTAGaaa > 1:434249/1‑90 (MQ=255) tgtgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGTTGGTTTGGGGGGGAAAAAAACCAAAATTTTTG‑AGaaaa > 1:317778/1‑90 (MQ=255) gtgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGC‑GGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGaaaaa < 2:52509/90‑1 (MQ=255) gggggTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGC‑GGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCAt < 1:251930/90‑1 (MQ=255) tttGCAACGAAGAACAGCCAACCGTTATGGC‑GGGTTGGTATGGTGGGGAAAAAAACTAAAATGTTTTAGAAAAAAAAAACAGAAAGGGCg > 1:526166/1‑90 (MQ=255) aCGAAGAACAGCCAACCGTTATGGC‑GGTTTGCTATGGGGGGGAAAAAAGCCAAAATTTTGCAGAAAAAAAAAACAGACAGTGCGGTTTGc > 1:12952/1‑90 (MQ=255) aaCCGTTATGGC‑GGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTaa < 2:434249/90‑1 (MQ=255) ggAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCcagcag > 1:319077/1‑90 (MQ=255) | GTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGC‑GGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAG > NZ_CP009273/1975939‑1976091 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |