Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779473	2779481	9	2 [0]	[1] 2	BW25113_RS13825/BW25113_RS26005	tRNA‑Ile/alpha‑amylase family glycosyl hydrolase

CTAATAATATAACTTTATTACATTAGCTGAAGAGTTTTCGCAT  >  NZ_CP009273/2779430‑2779472                                           | cTAATAATATAACTTTATTACATTAGCTGAAGAGTTTTCGcat  >  1:57086/1‑43 (MQ=255) cTAATAATATAACTTTATTACATTAGCTGAAGAGTTTTCGcat  <  2:57086/43‑1 (MQ=255)                                           | CTAATAATATAACTTTATTACATTAGCTGAAGAGTTTTCGCAT  >  NZ_CP009273/2779430‑2779472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑