Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3794633	3794653	21	3 [0]	[0] 2	rfaJ	lipopolysaccharide 1,2‑glucosyltransferase RfaJ

GCCACGGTTTAGTTGCACCTGTATAATGAATAAGAAGAGTACTTTCTGTAATCAGCTTTTTATAGTTTTGATGTGTTTTGTCTTTTAATT  >  NZ_CP009273/3794543‑3794632                                                                                          | gCCACGGTTTAGTTGCACCTGTATAATGAATAAGAAGAGTACTTTCTGTAATCAGCTTTTTATAGTTTTGATGTGTTTTGTCTTTTAAtt  <  1:316093/90‑1 (MQ=255)                                            ttCTGTAATCAGCTTTTTATAGTTTTGATGTGTTTTGTCTTTTAAtt  >  1:23250/1‑47 (MQ=255)                                            ttCTGTAATCAGCTTTTTATAGTTTTGATGTGTTTTGTCTTTTAAtt  <  2:23250/47‑1 (MQ=255)                                                                                          | GCCACGGTTTAGTTGCACCTGTATAATGAATAAGAAGAGTACTTTCTGTAATCAGCTTTTTATAGTTTTGATGTGTTTTGTCTTTTAATT  >  NZ_CP009273/3794543‑3794632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑