Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3797689	3797730	42	2 [0]	[1] 2	rfaS	LPS core biosynthesis protein RfaS

AATCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAATCATCATGACCTATTATAAAAAAGCGA  >  NZ_CP009273/3797612‑3797688                                                                             | aaTCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAATCATCATGACCTATTATAAAAAAGCga  >  1:162357/1‑77 (MQ=255) aaTCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAATCATCATGACCTATTATAAAAAAGCga  <  2:162357/77‑1 (MQ=255)                                                                             | AATCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAATCATCATGACCTATTATAAAAAAGCGA  >  NZ_CP009273/3797612‑3797688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑