Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	41958	42052	95	2 [1]	[1] 3	caiT/fixA	L‑carnitine/gamma‑butyrobetaine antiporter/electron transfer flavoprotein FixA

TAACTCATAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTT  >  NZ_CP009273/42038‑42127                |                                                                           tAACTCATAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAAttt  >  1:149560/1‑90 (MQ=255)                aTTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATa                        <  1:33040/53‑1 (MQ=255)                aTTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATa                        >  2:33040/1‑53 (MQ=255)                |                                                                           TAACTCATAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTT  >  NZ_CP009273/42038‑42127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑