Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2064859	2064880	22	2 [1]	[1] 3	BW25113_RS10440/agn43	GTPase family protein/autotransporter adhesin Ag43

GTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTA  >  NZ_CP009273/2064876‑2064965      |                                                                                     gTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTa  >  1:105257/1‑90 (MQ=255)      gAAAGACATTCAGGGAACAACAGAACCACAATTCAg                                                   >  1:121290/1‑36 (MQ=255)      gAAAGACATTCAGGGAACAACAGAACCACAATTCAg                                                   <  2:121290/36‑1 (MQ=255)      |                                                                                     GTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTA  >  NZ_CP009273/2064876‑2064965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑