Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3220945	3220987	43	2 [1]	[1] 2	ygjI	amino acid permease

TATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGA  >  NZ_CP009273/3220963‑3221077                          |                                                                                          tataAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCa                           >  2:77156/1‑90 (MQ=255)                          cgcCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGgaga  <  1:77156/90‑1 (MQ=255)                          |                                                                                          TATAAAGGGATTAACGGCTGAAGAGCGCCATATTGAAGCGACGCCAGCCAGCAATGTTGATTAAGCAGAATAATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGA  >  NZ_CP009273/3220963‑3221077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑