Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3280514	3280557	44	3 [1]	[0] 2	agaI/yraH	galactosamine‑6‑phosphate isomerase/fimbrial protein

TGACTCGCCCCCTGGCGCAGCAAAGTCAGGCATTTATACTC  >  NZ_CP009273/3280558‑3280598 |                                         tGACTCGCCCCCTGGCGCAGCAAAGTCAGGCATTTATActc  <  1:69464/41‑1 (MQ=255) tGACTCGCCCCCTGGCGCAGCAAAGTCAGGCATTTATActc  >  2:69464/1‑41 (MQ=255) |                                         TGACTCGCCCCCTGGCGCAGCAAAGTCAGGCATTTATACTC  >  NZ_CP009273/3280558‑3280598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑