Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3448779	3448879	101	2 [1]	[0] 3	gspA/gspC	type II secretion system protein GspA/type II secretion system protein GspC

TATTTATACTAACGTCAATATACAACCCACCCAATCTATTTTATTAGAACATACATCGTGCCCACACTACGTTTCCCCTTCCATCTGGCG  >  NZ_CP009273/3448880‑3448969 |                                                                                          tATTTATACTAACGTCAATATACAACCCACCCAATCTATTTTATTAGAACATACATCGTGccc                             >  1:160449/1‑63 (MQ=255) tATTTATACTAACGTCAATATACAACCCACCCAATCTATTTTATTAGAACATACATCGTGccc                             <  2:160449/63‑1 (MQ=255) tATTTATACTAACGTCAATATACAACCCACCCAATCTATTTTATTAGAACATACATCGTGCCCACACTACGTTTCCCCTTCCATCTGGCg  >  2:165350/1‑90 (MQ=255) |                                                                                          TATTTATACTAACGTCAATATACAACCCACCCAATCTATTTTATTAGAACATACATCGTGCCCACACTACGTTTCCCCTTCCATCTGGCG  >  NZ_CP009273/3448880‑3448969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑