Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3793122	3793124	3	2 [0]	[0] 4	waaZ	3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ

CAGCAGTTCTTTGTGAATCTGTCTCAAAATATTAAATTTAATCTTCTTTATAAAACCACCTTTTTCCCGACGGTAAAAGGACCGTAATAC  >  NZ_CP009273/3793125‑3793214 |                                                                                          cagcagTTCTTTGTGAATCTGTCTCAAAATATTAAATTTAATCTTCTTTATAAAACCACCTTTTTCCCGACGGTAAAAGGACCGTAATAc  >  1:143327/1‑90 (MQ=255) cagcagTTCTTTGTGAATCTGTCTCAAAATATTAAATTTAATCTTCTTTATAAAACCACCTTTTTCCCGACGGTAAAAGGACCGTAATAc  >  1:240028/1‑90 (MQ=255) cagcagTTCTTTGTGAATCTGTCTCAAAATATTAAATTTAATCTTCTTTATAAAACCACCTTTTTCCCGACGGTAAAAGGACCGTAATAc  >  1:78290/1‑90 (MQ=255) cagcagTTCTTTGTGAATCTGTCTCAAAATATTAAATTTAATCTTCTTTATAAAACCACCTTTTTCCCGACGGTAAAAGGACCGTAATAc  <  2:143327/90‑1 (MQ=255) |                                                                                          CAGCAGTTCTTTGTGAATCTGTCTCAAAATATTAAATTTAATCTTCTTTATAAAACCACCTTTTTCCCGACGGTAAAAGGACCGTAATAC  >  NZ_CP009273/3793125‑3793214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑