| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 287112 | NA (NA) | 32 (1.760) | 19/168 | 0.1 | 91.4% | intergenic (‑55/‑99) | BW25113_RS01405/BW25113_RS01410 | IS1‑like element IS1B family transposase/hypothetical protein |
| ? | NZ_CP009273 | = 481508 | 3 (0.170) | coding (292/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/287035‑287112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGTTCACC < NZ_CP009273/481508‑481427 CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAA > 2:288514/1‑90CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAA > 1:203225/1‑90 AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGA < 2:378748/82‑1 AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGA > 1:378748/1‑82 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT < 2:228567/90‑1 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT < 2:382386/90‑1 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT < 1:248250/90‑1 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT < 1:270265/90‑1 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT < 1:288514/90‑1 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT < 1:291234/90‑1 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCTC < 2:111876/90‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCTCT > 1:160587/1‑90 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT > 1:423936/1‑87 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT < 2:423936/87‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCTCTCT < 2:321794/90‑1 ACCTCAAAACCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGA > 2:145262/1‑90 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATG > 1:351536/1‑45 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATG < 2:351536/45‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATT < 2:69316/44‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATT > 1:69316/1‑44 CTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGAT > 1:213364/1‑90 CTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT > 1:48243/1‑48 CTAAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT < 2:48243/48‑1 AAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATAC > 2:339636/1‑90 AAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCTCTCTTAATACTGAGA < 2:173318/61‑1 AAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCTCTCTTAATACTGAGA > 1:173318/1‑61 AAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT > 1:454975/1‑46 AAATCAGTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCT < 2:454975/46‑1 GTAAGTTGGCAGCATCACCCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGC > 1:31374/1‑90 AGCATCACCCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGTTCAC > 1:516529/1‑90 GCATCACCCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGTTCACC < 1:513274/90‑1 GCATCACCCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGTTCACC < 1:104826/90‑1 CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/287035‑287112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGTTCACC < NZ_CP009273/481508‑481427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |