| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 481499 = | 1 (0.060) | 15 (0.840) | 13/166 | 0.3 | 93.8% | coding (283/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR |
| ? | NZ_CP009273 | = 1046000 | NA (NA) | intergenic (+14/+419) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH | |||||
GTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGG > NZ_CP009273/481411‑481586 | tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCa > 1:40599‑M1/89‑90 (MQ=255) cAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATg < 1:284590/90‑1 (MQ=255) cgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCATGt > 1:532107‑M1/86‑90 (MQ=255) caaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCATGTTCTTGa < 2:83700‑M1/11‑1 (MQ=255) ggTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGggtgatgc < 1:513274‑M2/90‑9 (MQ=255) ggTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGggtgatgc < 1:104826‑M2/90‑9 (MQ=255) gTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGggtgatgct > 1:516529‑M2/1‑81 (MQ=255) ggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCATGTTCTTGAATCCACGGTg > 2:360152‑M1/70‑90 (MQ=255) agctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCATGTTCTTGAATCCACGGTGAc > 2:364051‑M1/68‑90 (MQ=255) gCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGggtgatgctgccaacttac > 1:31374‑M2/1‑71 (MQ=255) gTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGggtgatgctgccaacttactgattt > 2:339636‑M2/1‑65 (MQ=255) aTCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGggtgatgctgccaacttactgatttag > 1:213364‑M2/1‑63 (MQ=255) tgaacataaaccactatcaataagttggagtcattacCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGAt > 1:111876‑M1/38‑90 (MQ=255) tCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtggttttgaggt > 2:145262‑M2/1‑41 (MQ=255) aaaacactatcaataagttggagtcattacCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTc < 1:183470‑M1/60‑1 (MQ=255) tctcAGTATTAAGAGAGATATTAATTCATGTTCTTGggtgatgctgccaacttactgattt > 1:173318‑M2/1‑36 (MQ=255) tctcAGTATTAAGAGAGATATTAATTCATGTTCTTGggtgatgctgccaacttactgattt < 2:173318‑M2/61‑26 (MQ=255) tatcaataagttggagtcattacCATGTTCTTGAATCCACg > 2:485024‑M1/24‑41 (MQ=255) tatcaataagttggagtcattacCATGTTCTTGAATCCACg < 1:485024‑M1/18‑1 (MQ=255) tatcaataagttggagtcattacCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAAt < 1:244409‑M1/67‑1 (MQ=255) aataagttggagtcattacCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGa < 1:105074‑M1/71‑1 (MQ=255) agagagATATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg < 2:321794‑M2/90‑66 (MQ=255) gttggagtcattacCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTg < 2:245860‑M1/76‑1 (MQ=255) agagaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtt > 1:160587‑M2/1‑23 (MQ=255) tggagtcattacCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTc < 1:151377‑M1/78‑1 (MQ=255) gagaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt < 2:111876‑M2/90‑69 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 2:382386‑M2/90‑70 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 1:291234‑M2/90‑70 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 2:228567‑M2/90‑70 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 1:288514‑M2/90‑70 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 1:270265‑M2/90‑70 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 1:248250‑M2/90‑70 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt > 1:423936‑M2/1‑21 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt < 2:423936‑M2/87‑67 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttag > 1:48243‑M2/1‑21 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgatttag < 2:48243‑M2/48‑28 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgattt < 2:454975‑M2/46‑26 (MQ=255) agaTATTAATTCATGTTCTTGggtgatgctgccaacttactgattt > 1:454975‑M2/1‑21 (MQ=255) gagtcattacCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCgg < 2:364447‑M1/80‑1 (MQ=255) ttacCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAt < 1:405830‑M1/86‑1 (MQ=255) aaTTCATGTTCTTGggtgatgctgccaacttactgatttagtgt > 1:69316‑M2/1‑14 (MQ=255) aaTTCATGTTCTTGggtgatgctgccaacttactgatttagtgt < 2:69316‑M2/44‑31 (MQ=255) ttCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctg > 2:288514‑M2/1‑12 (MQ=255) ttCATGTTCTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctg > 1:203225‑M2/1‑12 (MQ=255) cATGTTCTTGggtgatgctgccaacttactgatttagtgtatgat < 2:351536‑M2/45‑36 (MQ=255) cATGTTCTTGggtgatgctgccaacttactgatttagtgtatgat > 1:351536‑M2/1‑10 (MQ=255) | GTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGG > NZ_CP009273/481411‑481586 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |