Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2684957	2684969	13	2 [1]	[1] 2	qseE/purL	two component system sensor histidine kinase QseE/GlrK/phosphoribosylformylglycinamidine synthase

GGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGG  >  NZ_CP009273/2684965‑2685059      |                                                                                          ggttggtGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATc       >  1:470425/1‑90 (MQ=255)      gtGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATgg  >  2:129586/1‑90 (MQ=255)      |                                                                                          GGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGG  >  NZ_CP009273/2684965‑2685059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑