| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,787,825 | 0 | A | C | 54.5% | 0.3 / 10.0 | 11 | T72P (ACG→CCG) | gabP | GABA permease |
| Reads supporting (aligned to +/- strand): ref base A (1/4); new base C (6/0); total (7/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.26e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATA‑CCGGTTCGTTTTCCACCTATGCCGATAAAGCCATTGGTCGCTGGGCGGGCTATACCATCGG > NZ_CP009273/2787736‑2787895 | aaGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCa < 2:184076/90‑1 (MQ=255) gCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGGTGCCCCGCCCGCTA‑CCCGGTTGtttttc > 1:481342/1‑88 (MQ=255) ccTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGGTTCCCCCCCCCACA‑CCCGGTCGTGTTTCa > 1:529767/1‑90 (MQ=255) ccTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGGTGCCCCGCCCCAAACCCGGTTGTTTTTcc > 1:88503/1‑90 (MQ=255) tATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGGTTCCCCCCCCCCTA‑CCGGGTTGGTTTTCAcc > 1:493008/1‑90 (MQ=255) accTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCCCGCCCGATA‑CCGGGTCGGTTTTCACCt > 2:197449/3‑90 (MQ=255) aTCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCCCGCCCGCTA‑CCGGTTTGTTTTTCACCt > 2:477920/1‑90 (MQ=255) ggtggtTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCa < 1:127776/44‑1 (MQ=255) ggtggtTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCa > 2:127776/1‑44 (MQ=255) gtTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATA‑CCGGTTCGTTTTCCACCTATGCCGATAAAGCCATTGGTCGc < 1:42006/90‑1 (MQ=255) gtTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATA‑CCGGTTCGTTTTCCACCTATGCCGATAAAGCCATTGGTCGc < 2:26434/90‑1 (MQ=255) gATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATA‑CCGGTTCGTTTTCCACCTATGCCGATAAAGCCATTGGTCGCTgggc < 2:16997/90‑1 (MQ=255) tGGCGGAAATGGCGGTTTCCACGCCCGATA‑CCGGTTCGTTTTTCACCTATGCCGATAAAGCCATTGGGCGCTGGGCGGGCTAAACCATCg > 2:310165/1‑90 (MQ=255) ggCGGAAATGGCGGTTGCCACGCCCGATA‑CCGGTTCGTTTTCCACCTATGCCGATAAAGCCATTGGTCGCTGGGCGGGCTATACCATCgg < 2:446051/90‑1 (MQ=255) | AAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATA‑CCGGTTCGTTTTCCACCTATGCCGATAAAGCCATTGGTCGCTGGGCGGGCTATACCATCGG > NZ_CP009273/2787736‑2787895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |