| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 371,031 | 0 | T | G | 53.8% | 9.6 / 13.3 | 13 | G39G (GGT→GGG) | mhpT | 3‑(3‑hydroxy‑phenyl)propionate transporter |
| Reads supporting (aligned to +/- strand): ref base T (1/5); new base G (7/0); total (8/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.66e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCGCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGTGGCATCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACTCGGTTTGCTACCC > NZ_CP009273/370947‑371109 | ccGCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGTTGGCAt < 1:430014/90‑1 (MQ=255) cGCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCggggggggtc > 1:254512/1‑86 (MQ=255) cGCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGGGGGATc > 2:427118/1‑90 (MQ=255) gCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGGGGGATCg > 2:92565/1‑90 (MQ=255) gACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGGGGGATCGCCCCGGCttt > 2:325991/1‑90 (MQ=255) ggggTTTGTTTTTTGGTCGCCCCGATGGAAGGGCTGGAACTTCCGGCGGCTGGCATTGCGGCGGGTGGCATCGCACAGGCCTTCGCACTc < 1:239127/90‑1 (MQ=255) ttGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGGGGGATCGCCCCGGCTTTTGCACTCGATaa > 2:183091/1‑90 (MQ=255) gTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGTGGCATCGCCCAGGCTTTCGCACTCGATAAAATGCAAATg < 1:518467/90‑1 (MQ=255) cTGGATCTTCAGGCGGCTGGCATTGCGGCGGGGGGGATCGCCCCGGGTTTTGCACCCCGTAAAAAGCAAAAGGGGTGGGTATTTTGCGcc > 2:508440/1‑90 (MQ=255) ggATCTTCAGGCGGCTGGCATTGCGGCGGGGGGCATCGCCCCGGCTTTTGCACTCGATAAAAAGCAAAAGGGGTGGGTATTTTGCGCCgg > 2:460673/1‑90 (MQ=255) gATCTTCAGGCGGCTGGCATTGCGGCGGGTGTCAt < 1:297959/35‑1 (MQ=38) gATCTTCAGGCGGCTGGCATTGCGGCGGGTGTCAt > 2:297959/1‑35 (MQ=255) ttCAGGCGGCTGGCATTGCGGCGGGGGGCATCCCCCCGGCTTTTGCACCCGGTAAAATGCAAAAGGGGTGGGTATTTTGCGCCGGGATAc > 2:493333/1‑90 (MQ=255) aTTGCGGCGGGTGGCATCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACTCGGTTTGCTAccc < 1:92565/90‑1 (MQ=255) | CCGCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGTGGCATCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACTCGGTTTGCTACCC > NZ_CP009273/370947‑371109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |