| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 381,253 | 0 | T | G | 58.3% | 3.9 / 10.2 | 12 | V189G (GTG→GGG) | tauA | taurine ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (1/4); new base G (7/0); total (8/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGCAAAGATTTTGCCGAGAAAC > NZ_CP009273/381171‑381336 | aTCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGTGTTGAcc < 2:343138/90‑1 (MQ=255) tGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGGAAAAGACGGCCAGGGGTTGACCGGTTc > 1:282475/1‑90 (MQ=255) tGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAAACGGCAAGGGGTTGGCCGAttt > 2:427856/1‑89 (MQ=255) tGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGGTTACGCCCCCGAAAAAAACGGGAAGGGGTTGACCCAttt > 1:255818/1‑89 (MQ=255) ggggAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGGTAAAGCCCCGGGAAAAGACGGCAAGGGGTTGACCGGTTCTTAACAGGTCg > 1:123827/1‑90 (MQ=255) tGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGGGTTGACCGATTCTGAACAGGTCGGGCAGGGGGgcgc > 1:155092/1‑90 (MQ=255) tGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGGGTTGACCGATTCTGAACAGGGCGGGCAGTGGGgggc > 2:190012/1‑90 (MQ=255) aTGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGGGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGc > 2:98730/1‑90 (MQ=255) aCCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTg < 2:123827/90‑1 (MQ=255) aaGACGGCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGCAAAGATTTTGCCg > 2:411817/1‑90 (MQ=255) gCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGCAAAGATTTTGCCGAGAAAc < 1:89452/90‑1 (MQ=255) gCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGCAAAGATTTTGCCGAGAAAc < 2:282475/90‑1 (MQ=255) | ATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGCAAAGATTTTGCCGAGAAAC > NZ_CP009273/381171‑381336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |