Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1206499	1206541	43	2 [0]	[1] 5	mcrA	5‑methylcytosine‑specific endonuclease McrA

ATAACTGTGTTGCCCTTTGTCCGAATTGCCATAGAGAATTGCACTATAGTAAAAATGCAAAAGAACTAATCGAGATGCTTTACGTTAATATAAACCGATTACAGAA  >  NZ_CP009273/1206526‑1206631                 |                                                                                          aTAACTGTGTTGCCCTTTGTCCGAATTGCCATAGAGAATTGCACTATAGTAAAAATGCAAAAGAACTAATCGAGATGCTTTACGTTAata                  >  1:6575/1‑90 (MQ=255)                 ttGTCCGAATTGCCATAGAGAATTGCACTATAGTAAAAATGCaaaa                                              <  1:369257/46‑1 (MQ=255)                 ttGTCCGAATTGCCATAGAGAATTGCACTATAGTAAAAATGCaaaa                                              >  2:369257/1‑46 (MQ=255)                 ttGTCCGAATTGCCATAGAGAATTGCACTATAGTAAAAATGCAAAAGAACTAATCGAGATGCTTTACGTTAATATAAACCGATTACAGaa  >  1:178643/1‑90 (MQ=255)                 ttGTCCGAATTGCCATAGAGAATTGCACTATAGTAAAAATGCAAAAGAACTAATCGAGATGCTTTACGTTAATATAAACCGATTACAGaa  >  2:230290/1‑90 (MQ=255)                 |                                                                                          ATAACTGTGTTGCCCTTTGTCCGAATTGCCATAGAGAATTGCACTATAGTAAAAATGCAAAAGAACTAATCGAGATGCTTTACGTTAATATAAACCGATTACAGAA  >  NZ_CP009273/1206526‑1206631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑