Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1641055	1641066	12	4 [0]	[0] 2	flxA/BW25113_RS23105	FlxA‑like family protein/hypothetical protein

TGTATCATTTCTGATAGTTAACATTACAAGATATA  >  NZ_CP009273/1641067‑1641101 |                                   tGTATCATTTCTGATAGTTAACATTACAAGAtata  <  1:245882/35‑1 (MQ=255) tGTATCATTTCTGATAGTTAACATTACAAGAtata  >  2:245882/1‑35 (MQ=255) |                                   TGTATCATTTCTGATAGTTAACATTACAAGATATA  >  NZ_CP009273/1641067‑1641101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑