New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	1903030 =	0 (0.000)	10 (0.940)	10/168	0.2	100%	intergenic (‑7/‑152)	mgrB/yobH	PhoP/PhoQ regulator MgrB/YobH family protein
	?	NZ_CP009273	= 2063752	NA (NA)					intergenic (‑91/‑3)	BW25113_RS10425/BW25113_RS10435	IS3‑like element IS2 family transposase/TonB‑dependent receptor plug domain‑containing protein

ATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAAT  >  NZ_CP009273/1902944‑1903116                                                                                       |                                                                                       ctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTcc                                                                                     <  1:46594‑M1/4‑1 (MQ=255)                tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGGAACTTTTTCACTCCAATCTCCGT                                                                                   <  1:247125‑M1/77‑1 (MQ=255)                tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGGAACTTTTTCACTCCAATCTCCGT                                                                                   >  2:247125‑M1/1‑77 (MQ=255)                       tagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCAtt                                                               <  1:241310‑M1/26‑1 (MQ=255)                        aaGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctata                                                                    >  1:203416‑M1/1‑69 (MQ=255)                        aaGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctata                                                                    <  2:203416‑M1/84‑16 (MQ=255)                         gtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTaa                                                             <  2:286475‑M1/28‑1 (MQ=255)                         agcagcAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccag                                                             <  2:234233‑M1/90‑23 (MQ=255)                              aagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAg                                                        <  1:277322‑M1/33‑1 (MQ=255)                               agactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGc                                                       >  1:164494‑M1/57‑90 (MQ=255)                                gactatcacttatttaagtgatattggttgtctggagattcagggggccagcctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCa                                                      <  2:189801‑M1/35‑1 (MQ=255)                                  ctatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATg                                                    <  2:163793‑M1/37‑1 (MQ=255)                                   aagcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgtta                                                   <  1:263840‑M1/90‑33 (MQ=255)                                            ccacGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaac                                          >  2:134976‑M1/1‑49 (MQ=255)                                              acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaaccc                                        <  2:274465‑M1/90‑44 (MQ=255)                                                           ttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTAt                           <  2:34616‑M1/62‑1 (MQ=255)                                                             gtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGt                         <  1:278143‑M1/64‑1 (MQ=255)                                                             aCCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctg                         >  2:51687‑M1/1‑32 (MQ=255)                                                                                  ccAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcga    <  1:181914‑M1/90‑80 (MQ=255)                                                                                    ctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAAt  >  2:46594‑M1/4‑90 (MQ=255)                                                                                       |                                                                                       ATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAAT  >  NZ_CP009273/1902944‑1903116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.