New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3180784	NA (NA)	7 (0.670)	6/166	0.5	100%	coding (26/2466 nt)	BW25113_RS15810	fimbrial biogenesis outer membrane usher protein
	?	NZ_CP009273	3512452 =	0 (0.000)					intergenic (‑29/+372)	aroK/hofQ	shikimate kinase AroK/DNA uptake porin HofQ

ATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAA  >  NZ_CP009273/3180701‑3180868                                                                                    |                                                                                     aTCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTat                                                                                <  1:290573/90‑1 (MQ=35)                            aGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGc                                                     >  2:205204/1‑90 (MQ=255)                                           ggTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTACCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTcaacaa                                      <  1:122169/90‑1 (MQ=255)                                           ggTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTACCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTcaacaa                                      <  1:122170/90‑1 (MQ=255)                                                    aTAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAAt                             >  1:152089/1‑90 (MQ=255)                                                       aCAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGa                          <  1:33568/90‑1 (MQ=255)                                                                       ataGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGaa          <  2:260238/90‑1 (MQ=255)                                                                        taGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGaaa         <  2:144630/90‑1 (MQ=255)                                                                               aaaTCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTaa  >  1:21700/1‑90 (MQ=255)                                                                                    |                                                                                     ATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAA  >  NZ_CP009273/3180701‑3180868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.