Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1902940	1902958	19	3 [1]	[0] 2	mgrB	PhoP/PhoQ regulator MgrB

TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT  >  NZ_CP009273/1902959‑1903035 |                                                                             tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGGAACTTTTTCACTCCAATCTCCGT  <  1:247125‑M1/77‑1 (MQ=255) tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGGAACTTTTTCACTCCAATCTCCGT  >  2:247125‑M1/1‑77 (MQ=255) |                                                                             TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT  >  NZ_CP009273/1902959‑1903035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑