Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1974546	1974577	32	2 [1]	[1] 4	otsA	alpha,alpha‑trehalose‑phosphate synthase

GTTCAAGCAAGGTGTCATATGTCGGCAGCGCGTTGAAGATTTCCGGTGTCGGGAAAGGAATATGCAGAAAGAAACCAATGCGATTATTCACTCCCCGTTT  >  NZ_CP009273/1974568‑1974667           |                                                                                          gTTCAAGCAAGGTGTCATATGTCGGCAGCGCGTTGAAGATTTCCGGTGTCGGGAAAGGAATATGCAGAAAGAAACCAATGCGATTATTCa            >  2:43294/1‑90 (MQ=255)           ggTGTCATATGTCGGCAGCGCGTTGAAGATTTCCGGTGTCGGGAAAGGAATATGCAGAAAGAAACCAATGCGATTATTCACTCCCCGttt  <  1:173736/90‑1 (MQ=255)           ggTGTCATATGTCGGCAGCGCGTTGAAGATTTCCGGTGTCGGGAAAGGAATATGCAGAAAGAAACCAATGCGATTATTCACTCCCCGttt  >  2:209533/1‑90 (MQ=255)           ggTGTCATATGTCGGCAGCGCGTTGAAGATTTCCGGTGTCGGGAAAGGAATATGCAGAAAGAAACCAATGCGATTATTCACTCCCCGttt  >  2:61582/1‑90 (MQ=255)           |                                                                                          GTTCAAGCAAGGTGTCATATGTCGGCAGCGCGTTGAAGATTTCCGGTGTCGGGAAAGGAATATGCAGAAAGAAACCAATGCGATTATTCACTCCCCGTTT  >  NZ_CP009273/1974568‑1974667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑