Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2323576	2323605	30	2 [1]	[1] 3	BW25113_RS11635	alpha‑2‑macroglobulin family protein

GCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTT  >  NZ_CP009273/2323599‑2323695        |                                                                                          gCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTc         >  1:3715/1‑90 (MQ=255)        gCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCtctt  >  1:90871/1‑90 (MQ=255)        gCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCtctt  >  2:140249/1‑90 (MQ=255)        |                                                                                          GCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTT  >  NZ_CP009273/2323599‑2323695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑