Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1185925	1185950	26	2 [1]	[1] 2	phoP/purB	two‑component system response regulator PhoP/adenylosuccinate lyase

AGCATCCTGAATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATT  >  NZ_CP009273/1185835‑1185926                                                                                          |   aGCATCCTGAATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTGCGCGCATTTTTATTTCTCCCTGTCTTaa    <  1:157298/90‑1 (MQ=255)   cATCCTGAATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAatt  <  2:289771/90‑1 (MQ=255)                                                                                          |   AGCATCCTGAATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATT  >  NZ_CP009273/1185835‑1185926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑